RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 RYBPQ8N488 228 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CLDN19Q8N6F1 224 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM251Q8N6I4 163 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC37A3Q8NCC5 494 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CCDC54Q8NEL0 328 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NFAM1Q8NET5 270 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 OR4Q3Q8NH05 313 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 LHFPL5Q8TAF8 219 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 BLOC1S5Q8TDH9 187 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 KCTD4Q8WVF5 259 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PTH2Q96A98 100 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PPWD1Q96BP3 646 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SGTBQ96EQ0 304 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NSL1Q96IY1 281 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF582Q96NG8 517 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 AGAP4Q96P64 663 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CCDC3Q9BQI4 270 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF2Q9BSG1 426 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TIPINQ9BVW5 301 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 IFT27Q9BW83 186 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 FUNDC2Q9BWH2 189 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM39BQ9GZU3 492 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NEUROG2Q9H2A3 272 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZSCAN16Q9H4T2 348 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 KLHL31Q9H511 634 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ANKRD19PQ9H560 264 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 MARCH7Q9H992 704 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CAB39LQ9H9S4 337 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 VCX3AQ9NNX9 186 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ABCC13Q9NSE7 274 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 RMND1Q9NWS8 449 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 MIOXQ9UGB7 285 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NDRG2Q9UN36 371 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 DIMT1Q9UNQ2 313 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PDE10AQ9Y233 779 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 RNF6Q9Y252 685 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PEX16Q9Y5Y5 336 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 KIAA0232Q92628 1395 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PBRM1Q86U86 1689 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 HYKKA2RU49 373 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 LINC01553A4QN01 128 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM202A6NGA9 273 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 LINC00587B1AMM8 73 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 G3V3Y1 287 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 H3BNH8 94 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 PRMT5O14744 637 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 RAMP3O60896 148 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 MED6O75586 246 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TNFAIP8O95379 198 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM50AO95807 157 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 ANGPTL1O95841 491 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 IFNW1P05000 195 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 CT45A8P0DMV1 189 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 CT45A9P0DMV2 189 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 HRH2P25021 359 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 PRDX3P30048 256 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 GABRA4P48169 554 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 PRKXP51817 358 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 RBX1P62877 108 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 KLRC3Q07444 240 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TRAF3Q13114 568 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TPBGQ13641 420 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 VPS26BQ4G0F5 336 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 CT45A2Q5DJT8 189 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM268Q5VZI3 342 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 FBXL22Q6P050 247 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 BHLHB9Q6PI77 547 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 MBOAT1Q6ZNC8 495 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 GCNT7Q6ZNI0 430 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 STPG2Q8N412 459 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 KIF2BQ8N4N8 673 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 PXT1Q8NFP0 134 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 OR6N2Q8NGY6 317 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 OR4L1Q8NH43 312 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 PIGXQ8TBF5 258 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 APH1BQ8WW43 257 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TCEAL4Q96EI5 215 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 WDR34Q96EX3 536 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 FAM210BQ96KR6 192 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 CXorf58Q96LI9 332 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 NOL4LQ96MY1 436 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF75AQ96N20 296 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 FMO2Q99518 471 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 LGMNQ99538 433 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 HOPXQ9BPY8 73 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 ECSITQ9BQ95 431 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 BEX2Q9BXY8 128 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF717Q9BY31 904 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 ULBP1Q9BZM6 244 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 UCK2Q9BZX2 261 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 LAT2Q9GZY6 243 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 MMP28Q9H239 520 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 RHOJQ9H4E5 214 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 DDX19AQ9NUU7 478 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 GPATCH2LQ9NWQ4 482 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM9Q9P0T7 183 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 MRPS28Q9Y2Q9 187 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 V9GYY9 64 aa4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 AQRO60306 1485 aaKnown RBP eCLIP4.23□□□□□ -1.73
CCDC88A-210ENST00000468534 DOCK7Q96N67 2140 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms