RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZNF527Q8NB42 609 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 OR7G1Q8NGA0 311 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 FAM174AQ8TBP5 190 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 HSD17B8Q92506 261 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 KTI12Q96EK9 354 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 DERL3Q96Q80 235 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 GAL3ST4Q96RP7 486 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 GPX7Q96SL4 187 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 SRA1Q9HD15 236 aaKnown RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 NOX4Q9NPH5 578 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 HIF3AQ9Y2N7 669 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 CACNA1CQ13936 2221 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 ACOD1A6NK06 481 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 TMEM150CB9EJG8 249 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 FAM47E-STBD1D6RA91 191 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 H3BMH7 237 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 H7C1C5 153 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 ICOSLGO75144 302 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 CD14P08571 375 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 GALNSP34059 522 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 LCN6P62502 163 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 DGCR2P98153 550 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 EFR3AQ14156 821 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 ISXQ2M1V0 245 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 CCDC58Q4VC31 144 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 HSD17B12Q53GQ0 312 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 SNAP47Q5SQN1 464 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 MTFR2Q6P444 385 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 PRSS45Q7RTY3 260 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 JAZF1Q86VZ6 243 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 PRSS58Q8IYP2 241 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 IZUMO1Q8IYV9 350 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 TCTE3Q8IZS6 198 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF687Q8N1G0 1237 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 LSM14AQ8ND56 463 aaKnown RBP8.15□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF563Q8TA94 476 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 RNF166Q96A37 237 aaPredicted RBP8.15□□□□□ -1.11
SYNE1-217ENST00000466159 CREB3L1Q96BA8 519 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 LPAR4Q99677 370 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 PELOQ9BRX2 385 aaKnown RBP8.15□□□□□ -1.11
SYNE1-217ENST00000466159 SLC25A18Q9H1K4 315 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 ZCCHC4Q9H5U6 513 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 KLHDC2Q9Y2U9 406 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 CACNG2Q9Y698 323 aa8.15□□□□□ -1.11
SYNE1-217ENST00000466159 TRAV6A0A075B6T7 132 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 TMEM72A0PK05 275 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RHPN2P1A8MT19 583 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 SMLR1H3BR10 107 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 GATBO75879 557 aaKnown RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RPP14O95059 124 aaKnown RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ZFPL1O95159 310 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ASAH2BP0C7U1 165 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 SRFP11831 508 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 SRMP19623 302 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 SDHBP21912 280 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 TACR3P29371 465 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 EVI2BP34910 448 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RORAP35398 523 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 OR1D5P58170 312 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RRAS2P62070 204 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ZP2Q05996 745 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 TOMM34Q15785 309 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 NTRK2Q16620 822 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 NDUFA5Q16718 116 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 VWA2Q5GFL6 755 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 POMZP3Q6PJE2 187 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 UNQ9370/PRO34162Q6UXP9 181 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF721Q8TF20 911 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 YIPF5Q969M3 257 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ADIPOR1Q96A54 375 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ZDHHC12Q96GR4 267 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 MSANTD3Q96H12 275 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 LCORQ96JN0 433 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 SLC46A1Q96NT5 459 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 GFI1Q99684 422 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RXFP3Q9NSD7 469 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ANKRD10Q9NXR5 420 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ABRACLQ9P1F3 81 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RNF215Q9Y6U7 377 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 CABIN1Q9Y6J0 2220 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 LMO7DNF2Z398 122 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 UBL3O95164 117 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 WISP1O95388 367 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 DDAH2O95865 285 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 IGKV3-11P04433 115 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ADRB1P08588 477 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 OR8G3PP0DMU2 310 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 MYF5P13349 255 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 SDHAP31040 664 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 UQCRC1P31930 480 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RPS27P42677 84 aaKnown RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 RPL18Q07020 188 aaKnown RBP8.14□□□□□ -1.11
SYNE1-217ENST00000466159 IL10RAQ13651 578 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 C14orf28Q4W4Y0 310 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 ZNF684Q5T5D7 378 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 HES5Q5TA89 166 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 BCL2L15Q5TBC7 163 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 OVCH1Q7RTY7 1134 aa8.14□□□□□ -1.11
SYNE1-217ENST00000466159 EXD3Q8N9H8 876 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms