RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SMAD5Q99717 465 aaKnown RBP4.95□□□□□ -1.62
VPS41-211ENST00000466017 NIPSNAP1Q9BPW8 284 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 UTP23Q9BRU9 249 aaKnown RBP4.95□□□□□ -1.62
VPS41-211ENST00000466017 ING2Q9H160 280 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 METTL7AQ9H8H3 244 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 SLC25A19Q9HC21 320 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 FANCFQ9NPI8 374 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 MEPEQ9NQ76 525 aaPredicted RBP4.95□□□□□ -1.62
VPS41-211ENST00000466017 PAPOLBQ9NRJ5 636 aaKnown RBP4.95□□□□□ -1.62
VPS41-211ENST00000466017 KRT84Q9NSB2 600 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 SACM1LQ9NTJ5 587 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 LRFN1Q9P244 771 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 RHCGQ9UBD6 479 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 OSGIN1Q9UJX0 560 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 SLC7A7Q9UM01 511 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 NTNG1Q9Y2I2 539 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 PCDHGA9Q9Y5G4 932 aaKnown RBP4.95□□□□□ -1.62
VPS41-211ENST00000466017 AP4B1Q9Y6B7 739 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 PCNX3Q9H6A9 2034 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 GVINP1Q7Z2Y8 2422 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 WDFY4Q6ZS81 3184 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 DMDP11532 3685 aa4.95□□□□□ -1.62
VPS41-211ENST00000466017 VPS13AQ96RL7 3174 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 MED13Q9UHV7 2174 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 IGKV1D-42A0A075B6H8 117 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 LOC102725191A0A1B0GVB3 256 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 OR5H15A6NDH6 313 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 TRIM64A6NGJ6 449 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 A8MVM7 634 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 IMPA2O14732 288 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ARPC3O15145 178 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 TLX3O43711 291 aaPredicted RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 IDH3BO43837 385 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 MRPS14O60783 128 aaKnown RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 MT-ATP6P00846 226 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 P04436 131 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 HMGN1P05114 100 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SP1P08047 785 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 CCDC159P0C7I6 412 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 CLEC2LP0C7M8 214 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 CCL3P10147 92 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 APEHP13798 732 aaKnown RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 ZNF17P17021 662 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 FUT1P19526 365 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 WT1P19544 449 aaPredicted RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 CXCR1P25024 350 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ITGA3P26006 1051 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 MST1P26927 711 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ITPKBP27987 946 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ELK4P28324 431 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 TACR3P29371 465 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SRD5A2P31213 254 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 EIF2S3P41091 472 aaKnown RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 UCNP55089 124 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 PRPS1P60891 318 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ISL1P61371 349 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 HOXC5Q00444 222 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 EGR4Q05215 589 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 FOXO1Q12778 655 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ZP4Q12836 540 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 TUBA3CQ13748 450 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 PTGES3Q15185 160 aaKnown RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 QPRTQ15274 297 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 PLPPR5Q32ZL2 321 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ZNF691Q5VV52 312 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SLX4IPQ5VYV7 408 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 B3GNTL1Q67FW5 361 aaPredicted RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 C12orf73Q69YU5 71 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SLC25A25Q6KCM7 469 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 RPUSD3Q6P087 351 aaKnown RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 TUBA3EQ6PEY2 450 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 IGFL3Q6UXB1 125 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 WDR88Q6ZMY6 472 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 LHFPL2Q6ZUX7 228 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ASB18Q6ZVZ8 466 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 ADGRE4PQ86SQ3 457 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 KIF18BQ86Y91 864 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 CYP4Z2PQ8N1L4 340 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 BEST3Q8N1M1 668 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SIRT6Q8N6T7 355 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 PSD4Q8NDX1 1056 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SETD9Q8NE22 299 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 OR9Q2Q8NGE9 314 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 OR1J4Q8NGS1 313 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 MFSD8Q8NHS3 518 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 RHOXF1Q8NHV9 184 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SLC25A43Q8WUT9 341 aaPredicted RBP4.94□□□□□ -1.62
VPS41-211ENST00000466017 TMEM255BQ8WV15 326 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 OSTF1Q92882 214 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 C1GALT1C1Q96EU7 318 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 MBOAT4Q96T53 435 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 GPA33Q99795 319 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 APOL4Q9BPW4 351 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 FAM173AQ9BQD7 235 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 UBQLN3Q9H347 655 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 DSN1Q9H410 356 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 TOR3AQ9H497 397 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 FKRPQ9H9S5 495 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 SERINC1Q9NRX5 453 aa4.94□□□□□ -1.62
VPS41-211ENST00000466017 PLCXD1Q9NUJ7 323 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms