RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 UMPSP11172 480 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 PMS2P3Q13401 168 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 TRAM2Q15035 370 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 POU4F3Q15319 338 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 FREM1Q5H8C1 2179 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 BEND4Q6ZU67 534 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 H1FNTQ75WM6 255 aaPredicted RBP11.05□□□□□ -0.64
SKA1-203ENST00000417656 KIF18BQ86Y91 864 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 LRRC17Q8N6Y2 441 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 ZIC4Q8N9L1 334 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 ADPRHL1Q8NDY3 354 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 PIK3C3Q8NEB9 887 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 ZDHHC16Q969W1 377 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 MCUR1Q96AQ8 359 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 TMEM45BQ96B21 275 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 SGTBQ96EQ0 304 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 CADM1Q9BY67 442 aaKnown RBP11.05□□□□□ -0.64
SKA1-203ENST00000417656 KLHL4Q9C0H6 718 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 FKRPQ9H9S5 495 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 MRPL39Q9NYK5 338 aaKnown RBP11.05□□□□□ -0.64
SKA1-203ENST00000417656 ELOVL5Q9NYP7 299 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 B3GALT5Q9Y2C3 310 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 MED31Q9Y3C7 131 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 FAM32AQ9Y421 112 aaKnown RBP11.05□□□□□ -0.64
SKA1-203ENST00000417656 FLNBO75369 2602 aaKnown RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 TUBAL3A6NHL2 446 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 ACOT8O14734 319 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 TRAF3IP2O43734 574 aaPredicted RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 MRPL33O75394 65 aaKnown RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 SERPINI2O75830 405 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 OR7A10O76100 309 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 VAMP5O95183 116 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 FABP3P05413 133 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 H1F0P07305 194 aaKnown RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 RHCEP18577 417 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 UGT2B10P36537 528 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 KIR2DL3P43628 341 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 SPIBQ01892 262 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 POU3F1Q03052 451 aaPredicted RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 PUDPQ08623 228 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 TSC22D1Q15714 1073 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 IQCCQ4KMZ1 466 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 FGD3Q5JSP0 725 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 PGM2L1Q6PCE3 622 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 CREB3L2Q70SY1 520 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 AAED1Q7RTV5 226 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 NANOGNBQ7Z5D8 188 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 CXorf67Q86X51 503 aaPredicted RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 MEX3DQ86XN8 651 aaKnown RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 EPHX4Q8IUS5 362 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 NRMQ8IXM6 262 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 GABRG1Q8N1C3 465 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 OR5J2Q8NH18 312 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 LINC01560Q8TB33 94 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 ACOT11Q8WXI4 607 aaPredicted RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 LRGUKQ96M69 825 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 HS6ST2Q96MM7 605 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 OXGR1Q96P68 337 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 SEPHS2Q99611 448 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 PIP5K1AQ99755 562 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 TRIM15Q9C019 465 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 NMNAT1Q9HAN9 279 aaPredicted RBP11.04□□□□□ -0.64
SKA1-203ENST00000417656 NANSQ9NR45 359 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 CRIM1Q9NZV1 1036 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 ZNF229Q9UJW7 825 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 TESMINQ9Y4I5 508 aa11.04□□□□□ -0.64
SKA1-203ENST00000417656 ANKHD1Q8IWZ3 2542 aaKnown RBP11.03□□□□□ -0.64
SKA1-203ENST00000417656 SH3D21A4FU49 640 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 C11orf98E9PRG8 122 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 MS4A18H0YCH9 400 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 PLPP3O14495 311 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 STAMBPO95630 424 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ADAP00813 363 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ASAH2BP0C7U1 165 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ADORA3P0DMS8 318 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 IFI30P13284 250 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 HLA-DOBP13765 273 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ZNF43P17038 809 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ITGA2P17301 1181 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 FUT1P19526 365 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 AHCYP23526 432 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 PEX19P40855 299 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 SELENOPP49908 381 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 CLDN17P56750 224 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 C1DQ13901 141 aaKnown RBP11.03□□□□□ -0.64
SKA1-203ENST00000417656 MS4A18Q3C1V0 323 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 NIPAL3Q6P499 406 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 TBPL2Q6SJ96 375 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 STAC2Q6ZMT1 411 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ZNF730Q6ZMV8 503 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 Q6ZT83 130 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ZDHHC21Q8IVQ6 265 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 UEVLDQ8IX04 471 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 UBE2J2Q8N2K1 259 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 DHRS1Q96LJ7 313 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 LRMDAQ9H2I8 198 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 SLCO5A1Q9H2Y9 848 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 ANKRD19PQ9H560 264 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 PKDREJQ9NTG1 2253 aa11.03□□□□□ -0.64
SKA1-203ENST00000417656 A0A087WUU8 490 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms