RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KCNIP4Q6PIL6 250 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 NDUFAF7Q7L592 441 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TMEM104Q8NE00 496 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR13H1Q8NG92 308 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR10G3Q8NGC4 313 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ADAMTS14Q8WXS8 1223 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 RNF170Q96K19 258 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SELENOIQ9C0D9 397 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 RPS10P5Q9NQ39 176 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PCDHGA7Q9Y5G6 932 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ABCA9Q8IUA7 1624 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 IGKV6-21A0A0C4DH24 114 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TEX51A0A1B0GUA7 166 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 LINC01553A4QN01 128 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TMEM221A6NGB7 291 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PRAMEF25A6NGN4 478 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SERINC4A6NH21 518 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF593O00488 134 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 IMPA2O14732 288 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 MITFO75030 526 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 PCGF2P35227 344 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 GNB1P62873 340 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SEMA3BQ13214 749 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 COL9A3Q14050 684 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 SLC9A3R2Q15599 337 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF181Q2M3W8 571 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ENTPD8Q5MY95 495 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF767PQ75MW2 155 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SIAH1Q8IUQ4 282 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 CCDC28AQ8IWP9 274 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FAM185AQ8N0U4 392 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 BPIFB2Q8N4F0 458 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FAM71CQ8NEG0 241 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR8J2Q8NGG1 315 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR10X1Q8NGY0 326 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF384Q8TF68 577 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ASB11Q8WXH4 323 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 KIRREL1Q96J84 757 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 C4orf36Q96KX1 117 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 HYLS1Q96M11 299 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ERVMER34-1Q9H9K5 563 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 A3GALT2U3KPV4 340 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PPRC1Q5VV67 1664 aaKnown RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 MBLAC1A4D2B0 266 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 BOLA2-SMG1P6H3BVE0 249 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 AIFM1O95831 613 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR8G3PP0DMU2 310 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TPT1P13693 172 aaKnown RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 CCR7P32248 378 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 TAS2R19P59542 299 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 CLN3Q13286 438 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 FAM111BQ6SJ93 734 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF836Q6ZNA1 936 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 CYP4V2Q6ZWL3 525 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 VRK2Q86Y07 508 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 UBALD2Q8IYN6 164 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 GCNT2Q8N0V5 402 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 MFSD9Q8NBP5 474 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 KCNG3Q8TAE7 436 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 NETO1Q8TDF5 533 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 SLC25A43Q8WUT9 341 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 OR1E3Q8WZA6 343 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 NMES1Q9C002 83 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 WWTR1Q9GZV5 400 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 ARRDC1-AS1Q9H2J1 176 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 PAQR5Q9NXK6 330 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 LUZP4Q9P127 313 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 EXO1Q9UQ84 846 aaKnown RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 ZNF443Q9Y2A4 671 aaPredicted RBP6.68□□□□□ -1.34
UPF2-203ENST00000397053 PCDHGA5Q9Y5G8 931 aa6.68□□□□□ -1.34
UPF2-203ENST00000397053 METTL15A6NJ78 407 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 AIPO00170 330 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 P2RX6O15547 441 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 LYRM1O43325 122 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 HOXD11P31277 338 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 MMP12P39900 470 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 WNT7BP56706 349 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 TLE1Q04724 770 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 DUSP2Q05923 314 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 OR8G1Q15617 311 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ZNF718Q3SXZ3 478 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 LYPD8Q6UX82 237 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GDPGP1Q6ZNW5 385 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SLC35F3Q8IY50 421 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GDPD1Q8N9F7 314 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 UBAC2Q8NBM4 344 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 IFI44Q8TCB0 444 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CPNE4Q96A23 557 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 RAB3CQ96E17 227 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ABHD6Q9BV23 337 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 NTMT1Q9BV86 223 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SUCNR1Q9BXA5 334 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ACSS1Q9NUB1 689 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 OR52A1Q9UKL2 312 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ITSN1Q15811 1721 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 NUDT19A8MXV4 375 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 HLA-DOBP13765 273 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 MAKP20794 623 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 NR4A2P43354 598 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 HLCSP50747 726 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms