RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SERINC2Q96SA4 455 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 PDE7BQ9NP56 450 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 GAR1Q9NY12 217 aaKnown RBP11.03□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM200CA6NKL6 621 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 F10P00742 488 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 RAB35Q15286 201 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 CPEB2Q7Z5Q1 589 aaKnown RBP11.03□□□□□ -0.64
SYNPO-202ENST00000394243 AMIGO3Q86WK7 504 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 OR56B1Q8NGI3 324 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 MR1Q95460 341 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 ATOH8Q96SQ7 321 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 SYT17Q9BSW7 474 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 IL26Q9NPH9 171 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 TM7SF3Q9NS93 570 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 MED17Q9NVC6 651 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 FAM221BA6H8Z2 402 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 CLDN1O95832 211 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 OR2T7P0C7T2 308 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 AADACP22760 399 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 PTBP1P26599 531 aaKnown RBP eCLIP11.03□□□□□ -0.64
SYNPO-202ENST00000394243 TGFBR1P36897 503 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 VIPR2P41587 438 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 SLC6A8P48029 635 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 SUMO1P63165 101 aaKnown RBP11.03□□□□□ -0.64
SYNPO-202ENST00000394243 GRASPQ7Z6J2 395 aaPredicted RBP11.03□□□□□ -0.64
SYNPO-202ENST00000394243 OR2T27Q8NH04 317 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM59Q9BXS4 323 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 PLK3Q9H4B4 646 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 ARL2-SNX15V9GYD0 113 aa11.03□□□□□ -0.64
SYNPO-202ENST00000394243 A0A1W2PP55 124 aa11.02□□□□□ -0.64
SYNPO-202ENST00000394243 PHF1O43189 567 aaPredicted RBP11.02□□□□□ -0.64
SYNPO-202ENST00000394243 RAB28P51157 221 aa11.02□□□□□ -0.64
SYNPO-202ENST00000394243 GLCCI1Q86VQ1 547 aa11.02□□□□□ -0.64
SYNPO-202ENST00000394243 TMEM43Q9BTV4 400 aa11.02□□□□□ -0.64
SYNPO-202ENST00000394243 SGPP1Q9BX95 441 aa11.02□□□□□ -0.64
SYNPO-202ENST00000394243 OR51B6Q9H340 312 aa11.02□□□□□ -0.64
SYNPO-202ENST00000394243 OR2F2O95006 317 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 PAPLNO95428 1278 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 F13BP05160 661 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SRMP19623 302 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 TM4SF1P30408 202 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 NPY4RP50391 375 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SRYQ05066 204 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 OR2F1Q13607 317 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 TPPP3Q9BW30 176 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 TREX1Q9NSU2 369 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 ACSS1Q9NUB1 689 aaPredicted RBP11.02□□□□□ -0.65
SYNPO-202ENST00000394243 STEAP1Q9UHE8 339 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 B4GALT3O60512 393 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 MRPL19P49406 292 aaKnown RBP11.02□□□□□ -0.65
SYNPO-202ENST00000394243 Q6ZTK2 550 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 APH1BQ8WW43 257 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 DPF1Q92782 380 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 ISL2Q96A47 359 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SLC22A7Q9Y694 548 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 OR2T1O43869 369 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 H2AFB1P0C5Y9 115 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SLC35D2Q76EJ3 337 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 MACROD1Q9BQ69 325 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SELENOIQ9C0D9 397 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 NARFLQ9H6Q4 476 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 A0A1B0GTW7 788 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 GFRA2O00451 464 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 DPP4P27487 766 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 UBE2NP61088 152 aaKnown RBP11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SMAD2Q15796 467 aaKnown RBP11.02□□□□□ -0.65
SYNPO-202ENST00000394243 KDM4DQ6B0I6 523 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 MOB3CQ70IA8 216 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SIGLECL1Q8N7X8 197 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 HHATLQ9HCP6 504 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 SLCO3A1Q9UIG8 710 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 VDAC3Q9Y277 283 aa11.02□□□□□ -0.65
SYNPO-202ENST00000394243 MRPS17Q9Y2R5 130 aaKnown RBP11.02□□□□□ -0.65
SYNPO-202ENST00000394243 LDB3O75112 727 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CD79AP11912 226 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SPNP16150 400 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ARNTP27540 789 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 HTR1FP30939 366 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SNCAP37840 140 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 NXNL2Q5VZ03 156 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SAXO2Q658L1 398 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 FAM57BQ71RH2 274 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 RHOUQ7L0Q8 258 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ACOT4Q8N9L9 421 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 OR5L2Q8NGL0 311 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PIGCQ92535 297 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 KLHDC7BQ96G42 594 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 LRIG1Q96JA1 1093 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SEC14L6B5MCN3 397 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF593O00488 134 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 STC2O76061 302 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CHRM4P08173 479 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 GABRB1P18505 474 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 MAKP20794 623 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 FCER1GP30273 86 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 RAD52P43351 418 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 EPHA4P54764 986 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SELENBP1Q13228 472 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CTU2Q2VPK5 515 aaKnown RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 Q499Y3 187 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms