RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CARD18P57730 90 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 PON3Q15166 354 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 NXNL2Q5VZ03 156 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 PLBD1Q6P4A8 553 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 FAM131AQ6UXB0 335 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF836Q6ZNA1 936 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 RFPL4BQ6ZWI9 263 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 MAMDC2Q7Z304 686 aaPredicted RBP9.41□□□□□ -0.9
COL6A3-205ENST00000392004 LRRC18Q8N456 261 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 DDIT4LQ96D03 193 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 SLC35A3Q9Y2D2 325 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 TMED7Q9Y3B3 224 aa9.41□□□□□ -0.9
COL6A3-205ENST00000392004 SERPINA7P05543 415 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 CCL3P10147 92 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PNLIPP16233 465 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF3P17036 446 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 MRPL28Q13084 256 aaKnown RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 MAPK14Q16539 360 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PRICKLE4Q2TBC4 344 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ALG10Q5BKT4 473 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 LEG1Q6P5S2 330 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 QSOX2Q6ZRP7 698 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF367Q7RTV3 350 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 LHFPL3Q86UP9 236 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 CCDC28AQ8IWP9 274 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PTPMT1Q8WUK0 201 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF559Q9BR84 538 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 BEX2Q9BXY8 128 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 SLC6A15Q9H2J7 730 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 DIABLOQ9NR28 239 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 DUSP22Q9NRW4 184 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 NUFIP1Q9UHK0 495 aaKnown RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 DAPL1A0PJW8 107 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 KDM4EB2RXH2 506 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PLOD3O60568 738 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ICMTO60725 284 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 GGT2P36268 569 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 MAGEA2P43356 314 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 CDH11P55287 796 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 WNT3P56703 355 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 SIGIRRQ6IA17 410 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ULK3Q6PHR2 472 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 UEVLDQ8IX04 471 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 SFXN5Q8TD22 340 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 HRASLS5Q96KN8 279 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 NEDD4LQ96PU5 975 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 TNFRSF13CQ96RJ3 184 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 MGLLQ99685 303 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PITX2Q99697 317 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 NXF2Q9GZY0 626 aaKnown RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 EGLN3Q9H6Z9 239 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PLSCR3Q9NRY6 295 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 UNC119BA6NIH7 251 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 B4E171 279 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 J3QLW9 94 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PIP5K1CO60331 668 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ZNF19P17023 458 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 GPX2P18283 190 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 SLC6A6P31641 620 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 TSPAN7P41732 249 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 MXD1Q05195 221 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 RBPJQ06330 500 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 EBPQ15125 230 aaKnown RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 MPEG1Q2M385 716 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 CEP78Q5JTW2 689 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 SLC25A25Q6KCM7 469 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 LRFN4Q6PJG9 635 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ARSKQ6UWY0 536 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PLXDC2Q6UX71 529 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 CCDC190Q86UF4 302 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 CALHM3Q86XJ0 350 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 C10orf111Q8N326 155 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 OSTF1Q92882 214 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 INTS12Q96CB8 462 aaKnown RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ZMYND19Q96E35 227 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-205ENST00000392004 ST6GAL2Q96JF0 529 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 IP6K3Q96PC2 410 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 GPER1Q99527 375 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 SPEF1Q9Y4P9 236 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PCDHGA6Q9Y5G7 932 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 KLK4Q9Y5K2 254 aa9.4□□□□□ -0.9
COL6A3-205ENST00000392004 PRICKLE3O43900 615 aaPredicted RBP9.4□□□□□ -0.91
COL6A3-205ENST00000392004 TSPAN9O75954 239 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 FCER2P06734 321 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 TRAPPC2P0DI81 140 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 TRAPPC2BP0DI82 140 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 PYCR1P32322 319 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 RORCP51449 518 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 CLDN17P56750 224 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 CDCP2Q5VXM1 449 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 HBMQ6B0K9 141 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 MSANTD1Q6ZTZ1 278 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 PFN4Q8NHR9 129 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 FRMD6Q96NE9 622 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 MED20Q9H944 212 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 UCK1Q9HA47 277 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 SNTG1Q9NSN8 517 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 PCDHGB7Q9Y5F8 929 aa9.4□□□□□ -0.91
COL6A3-205ENST00000392004 PRRG2O14669 202 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 SLC30A4O14863 429 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms