RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GRAMD2BQ96HH9 432 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CAPNS2Q96L46 248 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 MOGAT1Q96PD6 335 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 DUSP26Q9BV47 211 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CNTNAP3Q9BZ76 1288 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 REEP4Q9H6H4 257 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PLSCR2Q9NRY7 297 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 GKN1Q9NS71 199 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 MYO5CQ9NQX4 1742 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1W2PRD5 423 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1W2PRF3 423 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1W2PRM7 423 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR4C46A6NHA9 309 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 COX7A2P2O60397 106 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PRDX6P30041 224 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 AHRP35869 848 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TFPI2P48307 235 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PSMB3P49720 205 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TUBA1BP68363 451 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 NKX3-2P78367 333 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 GABRA6Q16445 453 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM128Q5BJH2 165 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF324BQ6AW86 544 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CDC42EP5Q6NZY7 148 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TUBA1AQ71U36 451 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 CEACAM19Q7Z692 300 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 XYLT1Q86Y38 959 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 OR52N5Q8NH56 324 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 FAM213BQ8TBF2 198 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 LRTOMTQ8WZ04 291 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 GPR78Q96P69 363 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 RNF2Q99496 336 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 GPA33Q99795 319 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 PITHD1Q9GZP4 211 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 INTS6Q9UL03 887 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 DIMT1Q9UNQ2 313 aaKnown RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 SPTBN2O15020 2390 aa4.34□□□□□ -1.71
SCN1A-202ENST00000375405 INO80Q9ULG1 1556 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-202ENST00000375405 TDRD6O60522 2096 aaKnown RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 EDDM13A0A1B0GTR0 161 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 ATP6V1G2-DDX39BF2Z307 99 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 TMX2-CTNND1H3BSU7 103 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 HPGDSO60760 199 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 CTNSO60931 367 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 PSMB10P40306 273 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 P2RX3P56373 397 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 TAS2R31P59538 309 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 KRTDAPP60985 99 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 SNRPFP62306 86 aaKnown RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 MRPS5P82675 430 aaKnown RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 C19orf57Q0VDD7 668 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 MICAQ29983 383 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 DEFB109BQ30KR1 87 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 ADPRMQ3LIE5 342 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 RABL3Q5HYI8 236 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 LIPJQ5W064 366 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T2Q6IF00 324 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 RGMBQ6NW40 437 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC55Q6ZSA7 311 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 D2HGDHQ8N465 521 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM116Q8NCL8 245 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 CREB3L4Q8TEY5 395 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 TAMM41Q96BW9 452 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 MRPS24Q96EL2 167 aaKnown RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 FER1L6-AS2Q96M78 137 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 SLC2A13Q96QE2 648 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 GABRG3Q99928 467 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A11Q9NSA0 550 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 PPT2Q9UMR5 302 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 SLC6A14Q9UN76 642 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 RASD1Q9Y272 281 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 B3GNT3Q9Y2A9 372 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 SAMD9Q5K651 1589 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF701M0R085 212 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 KLK10O43240 276 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 C1orf105O95561 183 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 ACKR3P25106 362 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 OR10A3P58181 314 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 BTN1A1Q13410 526 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 OR2G6Q5TZ20 316 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 SLC16A14Q7RTX9 510 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 GID4Q8IVV7 300 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 PGBD5Q8N414 524 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 OR10G2Q8NGC3 310 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 OR52B6Q8NGF0 335 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 GPR150Q8NGU9 434 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 BCL2L2Q92843 193 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 EMG1Q92979 244 aaKnown RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 CMTM7Q96FZ5 175 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 CSPG4P5Q96PW8 444 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 FUNDC2Q9BWH2 189 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 C11orf54Q9H0W9 315 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-202ENST00000375405 FZD4Q9ULV1 537 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 OAZ3Q9UMX2 235 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC42Q9Y546 428 aa4.34□□□□□ -1.72
SCN1A-202ENST00000375405 K7EQS6 105 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GALR2O43603 387 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 RAB3DO95716 219 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 H2AFB2P0C5Z0 115 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SELEP16581 610 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms