RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SCGB2A1O75556 95 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 OPN1LWP04000 364 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 CD14P08571 375 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 TSFMP43897 325 aaKnown RBP10.6□□□□□ -0.71
PTPRF-203ENST00000372407 TAS2R46P59540 309 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 RBM39Q14498 530 aaKnown RBP10.6□□□□□ -0.71
PTPRF-203ENST00000372407 SLC48A1Q6P1K1 146 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 LYSMD2Q8IV50 215 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 LILRA3Q8N6C8 439 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-203ENST00000372407 WDSUB1Q8N9V3 476 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 OR52I1Q8NGK6 324 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 RSC1A1Q92681 617 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 HLA-CQ95604 372 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 C11orf54Q9H0W9 315 aaPredicted RBP10.6□□□□□ -0.71
PTPRF-203ENST00000372407 B3GNT2Q9NY97 397 aa10.6□□□□□ -0.71
PTPRF-203ENST00000372407 CSO75390 466 aaKnown RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 TK1P04183 234 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 RAB6AP20340 208 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 NFYAP23511 347 aaPredicted RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CD6P30203 668 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 PCBD1P61457 104 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SNRPGP62308 76 aaKnown RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CSNK1G2P78368 415 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ACTBL2Q562R1 376 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ADAMTSL4Q6UY14 1074 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 TMEFF1Q8IYR6 380 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 PRR18Q8N4B5 295 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CELF2-AS1Q8N7Q2 184 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 OR9K2Q8NGE7 335 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 MALSU1Q96EH3 234 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 NMNAT3Q96T66 252 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 VN1R3Q9BXE9 311 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SMIM3Q9BZL3 60 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SLC25A31Q9H0C2 315 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 MARCH5Q9NX47 278 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 COPS3Q9UNS2 423 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 POLR2AP24928 1970 aaKnown RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 I6L893 689 aaPredicted RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SERPINA2P20848 420 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 HTR2CP28335 458 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 NKX6-1P78426 367 aaPredicted RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 FAM78AQ5JUQ0 283 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ALKAL2Q6UX46 152 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 TRAPPC6BQ86SZ2 158 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ZNF454Q8N9F8 522 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SLC16A11Q8NCK7 471 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 OR56B1Q8NGI3 324 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 C22orf15Q8WYQ4 148 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 MICU1Q9BPX6 476 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CMSS1Q9BQ75 279 aaKnown RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ENKD1Q9H0I2 346 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 HRH4Q9H3N8 390 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 PRSS16Q9NQE7 514 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SEMA4GQ9NTN9 838 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 FBXL2Q9UKC9 423 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 LINC01553A4QN01 128 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 PPP3CBP16298 524 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 MMP11P24347 488 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 TRIM23P36406 574 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 TNK1Q13470 666 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CCSMST1Q4G0I0 132 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ARSJQ5FYB0 599 aaPredicted RBP10.59□□□□□ -0.71
PTPRF-203ENST00000372407 BEX5Q5H9J7 111 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 MFSD12Q6NUT3 480 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 SVBPQ8N300 66 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 OR14A16Q8NHC5 309 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 RSPRY1Q96DX4 576 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 HHIPQ96QV1 700 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 TMEM59Q9BXS4 323 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 ACAD8Q9UKU7 415 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CORINQ9Y5Q5 1042 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 KRBOX1C9JBD0 128 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 FBXO24O75426 580 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 CD63P08962 238 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 GPR176Q14439 515 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 FCN2Q15485 313 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 PPP1R3BQ86XI6 285 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 LINC01465Q8N7H1 131 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 OLIG1Q8TAK6 271 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 PCDHGA6Q9Y5G7 932 aa10.59□□□□□ -0.71
PTPRF-203ENST00000372407 DDX60LQ5H9U9 1706 aaKnown RBP10.58□□□□□ -0.72
PTPRF-203ENST00000372407 OR6C6A6NF89 314 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 SURF4O15260 269 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 CLEC2LP0C7M8 214 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 PRKACAP17612 351 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 GCH1P30793 250 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 CASP6P55212 293 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 SLC9A3R2Q15599 337 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF674Q2M3X9 581 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 ZMAT1Q5H9K5 638 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 TMEM201Q5SNT2 666 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 GPR155Q7Z3F1 870 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 GDF7Q7Z4P5 450 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 PDXPQ96GD0 296 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 NME7Q9Y5B8 376 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 TRBV11-1A0A0K0K1C0 115 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 POM121CA8CG34 1229 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 OR7C1O76099 320 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-203ENST00000372407 FUCA1P04066 466 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 ATP1B1P05026 303 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms