RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 RDH10Q8IZV5 341 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 OR2T27Q8NH04 317 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 LCORQ96JN0 433 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 FAM210AQ96ND0 272 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SOSTQ9BQB4 213 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 NOX4Q9NPH5 578 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 RBFOX1Q9NWB1 397 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 PAQR5Q9NXK6 330 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ICAM5Q9UMF0 924 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 KLHDC2Q9Y2U9 406 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 IGHV1OR21-1A0A087WYE8 117 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 H0YIG0 161 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ARHGEF9O43307 516 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 FZD7O75084 574 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 PPM1BO75688 479 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 AGFG1P52594 562 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 NXPH1P58417 271 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 NANOS3P60323 173 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 HSD11B2P80365 405 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 DMWDQ09019 674 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SMAD4Q13485 552 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 NANOGNBQ7Z5D8 188 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ATG4DQ86TL0 474 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 KDM8Q8N371 416 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SLC7A6Q92536 515 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 TAAR8Q969N4 342 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 NKX3-1Q99801 234 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ABCG5Q9H222 651 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 BEX1Q9HBH7 125 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 GALNT9Q9HCQ5 603 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 GTF2A1LQ9UNN4 478 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 NDUFB5O43674 189 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SLC19A2O60779 497 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 HLA-DQA2P01906 255 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 FBLP22087 321 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 PPICP45877 212 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 PLCXD2Q0VAA5 305 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 POU4F2Q12837 409 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 COL13A1Q5TAT6 717 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 PRR23CQ6ZRP0 262 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 C9orf40Q8IXQ3 194 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 OR6N2Q8NGY6 317 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 KIAA1143Q96AT1 154 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 DACT3Q96B18 629 aaPredicted RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SMIM19Q96E16 107 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 ADAD1Q96M93 576 aaKnown RBP9.42□□□□□ -0.9
LIMA1-201ENST00000341247 TBL1XR1Q9BZK7 514 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 SYT4Q9H2B2 425 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 FKRPQ9H9S5 495 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 MMP25Q9NPA2 562 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 GRHPRQ9UBQ7 328 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 KLHL21Q9UJP4 597 aa9.42□□□□□ -0.9
LIMA1-201ENST00000341247 CPED1A4D0V7 1026 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 FLRT2O43155 660 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 DDAH2O95865 285 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 ADRB1P08588 477 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HOXD12P35452 270 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 GPR176Q14439 515 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 SLC25A45Q8N413 288 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF721Q8TF20 911 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 RFT1Q96AA3 541 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 WDR76Q9H967 626 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF304Q9HCX3 659 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 RXFP3Q9NSD7 469 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HAO2Q9NYQ3 351 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 TEKT2Q9UIF3 430 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 SLC6A5Q9Y345 797 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 CEP192Q8TEP8 1941 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HMX3A6NHT5 357 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 OR6C70A6NIJ9 312 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 SOX1O00570 391 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-201ENST00000341247 IL33O95760 270 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HIST1H2ABP04908 130 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 PTHLHP12272 177 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 CXCR1P25024 350 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 PITPNBP48739 271 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 DGCR2P98153 550 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 LRRC69Q6ZNQ3 347 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HIST3H2AQ7L7L0 130 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 DPY19L4Q7Z388 723 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 LRRC28Q86X40 367 aaPredicted RBP9.41□□□□□ -0.9
LIMA1-201ENST00000341247 CMIPQ8IY22 773 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 YIPF7Q8N8F6 280 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 ADAMTS18Q8TE60 1221 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 THEM6Q8WUY1 208 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 PIGKQ92643 395 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HIST1H2ACQ93077 130 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 ZNF285Q96NJ3 590 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 ULBP3Q9BZM4 244 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 OR11A1Q9GZK7 315 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 CYSLTR2Q9NS75 346 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 FGF21Q9NSA1 209 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 PCDHGB7Q9Y5F8 929 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 DOK2O60496 412 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 CD14P08571 375 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 PRPS1P60891 318 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 RPS11P62280 158 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMA1-201ENST00000341247 HSD17B12Q53GQ0 312 aa9.41□□□□□ -0.9
LIMA1-201ENST00000341247 PM20D2Q8IYS1 436 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms