RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TAS2R30P59541 319 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ERVFC1P60507 584 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 DCDP81605 110 aaKnown RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 KCNIP4Q6PIL6 250 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ZNF705AQ6ZN79 300 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 AGBL5Q8NDL9 886 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 LINC01599Q8WXQ3 324 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 DVL3Q92997 716 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 ANKRD9Q96BM1 317 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 ZMAT3Q9HA38 289 aaKnown RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 METTL15A6NJ78 407 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 DNAJB6O75190 326 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 DDAH2O95865 285 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ABHD16AO95870 558 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 APOA2P02652 100 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 MAKP20794 623 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 UPRTQ96BW1 309 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 BCL7BQ9BQE9 202 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 CDCP1Q9H5V8 836 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.72□□□□□ -0.53
SDC3-201ENST00000336798 LANCL2Q9NS86 450 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 CEPT1Q9Y6K0 416 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 RRP8O43159 456 aaKnown RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 GPR75O95800 540 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 B3GALT4O96024 378 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 GABRA4P48169 554 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 KEAP1Q14145 624 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 MPEG1Q2M385 716 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 FAM213BQ8TBF2 198 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 WASH6PQ9NQA3 447 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 SLAMF8Q9P0V8 285 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 I6L893 689 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 CNMDO75829 334 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 F2RP25116 425 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ZNF140P52738 457 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 ARHGAP11BQ3KRB8 267 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 HBMQ6B0K9 141 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ZNF546Q86UE3 836 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 MRPL43Q8N983 215 aaKnown RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 HPSE2Q8WWQ2 592 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ACOT11Q8WXI4 607 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 TNFRSF13CQ96RJ3 184 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 TMEM265A0A087WTH1 108 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 GPR137BO60478 399 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 GASTP01350 101 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 EN2P19622 333 aaPredicted RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 NME2P22392 152 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 TAS2R19P59542 299 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 FAM69AQ5T7M9 428 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 MRPL10Q7Z7H8 261 aaKnown RBP11.72□□□□□ -0.53
SDC3-201ENST00000336798 GAB3Q8WWW8 586 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 TIMM29Q9BSF4 260 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 ZNF816-ZNF321PA0A0X1KG74 233 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 G0S2P27469 103 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 ZNF92Q03936 586 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 RAB40BQ12829 278 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 HSF5Q4G112 596 aaPredicted RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 MARCH3Q86UD3 253 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 ZNF321PQ8N8H1 164 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 TMEM104Q8NE00 496 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 SLC7A13Q8TCU3 470 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 SLC6A18Q96N87 628 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 C12orf57Q99622 126 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 OSGIN2Q9Y236 505 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 CITO14578 2027 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 KCPQ6ZWJ8 1503 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 NDUFB7P17568 137 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 ENPP1P22413 925 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 BLVRBP30043 206 aaPredicted RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 UBE2KP61086 200 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 DMWDQ09019 674 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 HTR3DQ70Z44 454 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 SYT9Q86SS6 491 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 NAT6Q93015 286 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 MUL1Q969V5 352 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 HRASLS5Q96KN8 279 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 PRR14Q9BWN1 585 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 PATZ1Q9HBE1 687 aaKnown RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 SDR39U1Q9NRG7 319 aaPredicted RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 GLTPQ9NZD2 209 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 MTCH1Q9NZJ7 389 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 MYH2Q9UKX2 1941 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 NSA2O95478 260 aaKnown RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 BMP2P12643 396 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 CASP3P42574 277 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 GNB2P62879 340 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 MORN1Q5T089 497 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 PTCRAQ6ISU1 281 aaPredicted RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 SLC46A3Q7Z3Q1 461 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 BCDIN3DQ7Z5W3 292 aaKnown RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 NRG4Q8WWG1 115 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 ZNF436Q9C0F3 470 aaPredicted RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 C1orf198Q9H425 327 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 ERVMER34-1Q9H9K5 563 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 TAS2R16Q9NYV7 291 aa11.71□□□□□ -0.53
SDC3-201ENST00000336798 MRPS28Q9Y2Q9 187 aaKnown RBP11.71□□□□□ -0.53
SDC3-201ENST00000336798 GABARAPH6UMI1 98 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 GABARAPO95166 117 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 UTS2O95399 124 aa11.71□□□□□ -0.54
SDC3-201ENST00000336798 BCKDHBP21953 392 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms