RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 EXOSC3Q9NQT5 275 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CTSFQ9UBX1 484 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PSORS1C1Q9UIG5 152 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PILRBQ9UKJ0 227 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TBX1O43435 398 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 WBP4O75554 376 aaKnown RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 MAN2A2P49641 1150 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 RAB39AQ14964 217 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF141Q15928 474 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF691Q5VV52 312 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 DEGS2Q6QHC5 323 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CD300LDQ6UXZ3 194 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 LINC00696Q6ZRV3 163 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 GHDCQ8N2G8 530 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CLIP4Q8N3C7 705 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 SLC25A45Q8N413 288 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 CCDC107Q8WV48 283 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 FOXRED1Q96CU9 486 aaPredicted RBP6.3□□□□□ -1.4
SF3B1-201ENST00000335508 TM4SF19Q96DZ7 209 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 VSTM2LQ96N03 204 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 RASD1Q9Y272 281 aa6.3□□□□□ -1.4
SF3B1-201ENST00000335508 PCM1Q15154 2024 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 A0A1W2PQD3 144 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 SNPHO15079 494 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 P2RX6O15547 441 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 FOXS1O43638 330 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 RAF1P04049 648 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 RLN1P04808 185 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GUSBP08236 651 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 HCKP08631 526 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 UCHL1P09936 223 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 PTGS2P35354 604 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 APOFQ13790 326 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GFOD2Q3B7J2 385 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ARHGAP22Q7Z5H3 698 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 LIX1LQ8IVB5 337 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 BCORP1Q8N888 145 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 OR13C2Q8NGS9 318 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ISOC1Q96CN7 298 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ABCB9Q9NP78 766 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ISYNA1Q9NPH2 558 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ING3Q9NXR8 418 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 PILRAQ9UKJ1 303 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 PLEKHA6Q9Y2H5 1048 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 TMEM269A0A1B0GVZ9 245 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 BCAS1O75363 584 aaPredicted RBP6.29□□□□□ -1.4
SF3B1-201ENST00000335508 TPOP07202 933 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 FGF5P12034 268 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ADH6P28332 368 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 C21orf33P30042 268 aaPredicted RBP6.29□□□□□ -1.4
SF3B1-201ENST00000335508 HTR1FP30939 366 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 DLSTP36957 453 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 TPBGQ13641 420 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 COL19A1Q14993 1142 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 DPPA2Q7Z7J5 298 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GALNT6Q8NCL4 622 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 OR5L1Q8NGL2 311 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 OR1J2Q8NGS2 313 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 C3orf49Q96BT1 292 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 CDCA4Q9BXL8 241 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GABARAPL3Q9BY60 117 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF407Q9C0G0 2248 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 A0A087WUJ7 227 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 IQCMA0A1B0GVH7 501 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 PMS2P1A4D2B8 440 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 BPNT1O95861 308 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 FUCA1P04066 466 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 RAB3BP20337 219 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 TBXA2RP21731 343 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ELK4P28324 431 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 EIF5AP63241 154 aaKnown RBP6.29□□□□□ -1.4
SF3B1-201ENST00000335508 MZT1Q08AG7 82 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 MFAP5Q13361 173 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 SLC10A1Q14973 349 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 IDNKQ5T6J7 187 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 SLC25A25Q6KCM7 469 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ESPNLQ6ZVH7 1005 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ZBTB46Q86UZ6 589 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GJC3Q8NFK1 279 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 FAM131CQ96AQ9 280 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 THOC3Q96J01 351 aaKnown RBP6.29□□□□□ -1.4
SF3B1-201ENST00000335508 WWTR1Q9GZV5 400 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 MCUBQ9NWR8 336 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GMPR2Q9P2T1 348 aaKnown RBP6.29□□□□□ -1.4
SF3B1-201ENST00000335508 USP22Q9UPT9 525 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 GPR52Q9Y2T5 361 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ZAR1LA6NP61 321 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 M0R082 166 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 SUSD5O60279 629 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 LCATP04180 440 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 LCKP06239 509 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 EMDP50402 254 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 RPL27P61353 136 aaKnown RBP6.29□□□□□ -1.4
SF3B1-201ENST00000335508 BDH1Q02338 343 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 ZNF750Q32MQ0 723 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 TMPRSS12Q86WS5 348 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 NKAIN4Q8IVV8 208 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 IQCF1Q8N6M8 205 aa6.29□□□□□ -1.4
SF3B1-201ENST00000335508 SGCDQ92629 289 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms