RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GALNTL5Q7Z4T8 443 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 SPARTQ8N0X7 666 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF540Q8NDQ6 660 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 TM9SF4Q92544 642 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 GGHQ92820 318 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 MYDGFQ969H8 173 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 KLHL15Q96M94 604 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 ERMAPQ96PL5 475 aaPredicted RBP13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 NMNAT2Q9BZQ4 307 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 ACKR4Q9NPB9 350 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 INIPQ9NRY2 104 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 ADAM18Q9Y3Q7 739 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 IER3IP1Q9Y5U9 82 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 SPTBN4Q9H254 2564 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 CACNA1AO00555 2505 aa13.41□□□□□ -0.26
CCDC88C-202ENST00000334448 A6NHS1 94 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 EIF4E1BA6NMX2 242 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 H3BML4 177 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC2A10O95528 541 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CDK1P06493 297 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 DBTP11182 482 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 HIST1H1CP16403 213 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 PAICSP22234 425 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC2A5P22732 501 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 EEF1B2P24534 225 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 GDF1P27539 372 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 GTF2E2P29084 291 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SHC1P29353 583 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 MEOX1P50221 254 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC25A1P53007 311 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 NUDT6P53370 316 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CTXN1P60606 82 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC35A1P78382 337 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 H3F3AP84243 136 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 TLE3Q04726 772 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 ITGADQ13349 1161 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CRMP1Q14194 572 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 IRF3Q14653 427 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 OR7A5Q15622 319 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 GXYLT1Q4G148 440 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 FAM205BPQ63HN1 556 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 PAQR6Q6TCH4 344 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 NHLRC1Q6VVB1 395 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CCDC81Q6ZN84 652 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CXXC5Q7LFL8 322 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 PXKQ7Z7A4 578 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 ADCK1Q86TW2 530 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 TMEM251Q8N6I4 163 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC37A3Q8NCC5 494 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 NPEPL1Q8NDH3 523 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 OR5M1Q8NGP8 315 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 OR14L1PQ8NHC6 308 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 ZNF519Q8TB69 540 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SNRNP27Q8WVK2 155 aaKnown RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SGCDQ92629 289 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 SLC25A36Q96CQ1 311 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 ADGRG7Q96K78 797 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 RHNO1Q9BSD3 238 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 COPS4Q9BT78 406 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 JAM3Q9BX67 310 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CDCA4Q9BXL8 241 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 TXNIPQ9H3M7 391 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 HAO2Q9NYQ3 351 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 RPH3AQ9Y2J0 694 aaPredicted RBP13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 GPR52Q9Y2T5 361 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 PCNX3Q9H6A9 2034 aa13.4□□□□□ -0.26
CCDC88C-202ENST00000334448 AQP7P3A6NL99 342 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 PTGES3LE9PB15 166 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 PRR23D1E9PI22 279 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 K7ENP7 123 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 EIF1BO60739 113 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 PRR23D2P0DMB1 279 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ADORA3P0DMS8 318 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ATP6V1B1P15313 513 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 PCMT1P22061 227 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 NOS3P29474 1203 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ID4P47928 161 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 DIO1P49895 249 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 AGFG1P52594 562 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 UCNP55089 124 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 CDH11P55287 796 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ERVK-25P63136 954 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 CSNK2A1P68400 391 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 RAB40BQ12829 278 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 POU4F3Q15319 338 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 TBCEQ15813 527 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 BCL2A1Q16548 175 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 TMEM176BQ3YBM2 270 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC35F1Q5T1Q4 408 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 XAF1Q6GPH4 301 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 INO80CQ6PI98 192 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 AHSA2Q719I0 299 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 YRDCQ86U90 279 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 GGNQ86UU5 652 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 IGFN1Q86VF2 1251 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC22A16Q86VW1 577 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 CPOQ8IVL8 374 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 FAM109AQ8N4B1 249 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms