RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 RD3LP0DJH9 198 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SELPP16109 830 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SYN1P17600 705 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 GABRR2P28476 465 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 PRMT2P55345 433 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 PPIAP62937 165 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 TAF13Q15543 124 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 NDUFAF6Q330K2 333 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 GXYLT1Q4G148 440 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 JMJD6Q6NYC1 403 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 LCTLQ6UWM7 567 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SHISA5Q8N114 240 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SETD7Q8WTS6 366 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 BPIFA2Q96DR5 249 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 CPNE2Q96FN4 548 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 LMLNQ96KR4 655 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 UTP23Q9BRU9 249 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SLC23A2Q9UGH3 650 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 LSM7Q9UK45 103 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 SIGLEC7Q9Y286 467 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 V9GY05 133 aa12.34□□□□□ -0.43
CCDC88C-201ENST00000331194 A0A1B0GVT2 93 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 MEX3AA1L020 520 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 PRR32B1ATL7 298 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ACOT7O00154 380 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ERI3O43414 337 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ACTL6AO96019 429 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 MGMTP16455 207 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ADRA2CP18825 462 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 PTGFRP43088 359 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 EFNB2P52799 333 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 BLOC1S1P78537 153 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 LIN54Q6MZP7 749 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 GAREM2Q75VX8 874 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 OR1M1Q8NGA1 313 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 SGK3Q96BR1 496 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 HHIPL1Q96JK4 782 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 VRK1Q99986 396 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 FAM117AQ9C073 453 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 EXO5Q9H790 373 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 MEPEQ9NQ76 525 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 SLC35A3Q9Y2D2 325 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 SCN5AQ14524 2016 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 RFPL4AA6NLU0 287 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 RFPL4AL1F8VTS6 287 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ST8SIA5O15466 376 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ZFPL1O95159 310 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 AIFM1O95831 613 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 CD3DP04234 171 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 CCL5P13501 91 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 CST5P28325 142 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 NDUFS1P28331 727 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 SNRPNP63162 240 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 AKIRIN2Q53H80 203 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 JAZF1Q86VZ6 243 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 OR4N5Q8IXE1 308 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ADAMTS15Q8TE58 950 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 TFGQ92734 400 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 IL21Q9HBE4 155 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 NIT2Q9NQR4 276 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 INPP5EQ9NRR6 644 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 C14orf105Q9NVL8 296 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 PLXNA2O75051 1894 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 PQLC2LA1A4F0 135 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 C4orf47A7E2U8 309 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 RBBP9O75884 186 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 MAS1P04201 325 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 GTF2F2P13984 249 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 CERS1P27544 350 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 MLC1Q15049 377 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 OR1Q1Q15612 314 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 OR7A5Q15622 319 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF124Q15973 351 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 C21orf62-AS1Q17RA5 79 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 FNDC3BQ53EP0 1204 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 H3F3CQ6NXT2 135 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 C5orf46Q6UWT4 87 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 LRRTM1Q86UE6 522 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 GLB1L2Q8IW92 636 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 BEST3Q8N1M1 668 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 HAVCR1Q96D42 359 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 POFUT1Q9H488 388 aa12.33□□□□□ -0.44
CCDC88C-201ENST00000331194 WDR87Q6ZQQ6 2873 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 LRIT2A6NDA9 550 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 PEX12O00623 359 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 ITGA10O75578 1167 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 PAK4O96013 591 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 RNF224P0DH78 156 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 PLEKHN1Q494U1 663 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 RAB12Q6IQ22 244 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 GJD3Q8N144 294 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 SVBPQ8N300 66 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 PAQR8Q8TEZ7 354 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 WDR45Q9Y484 360 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF879B4DU55 563 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF749O43361 778 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 FBXO45P0C2W1 286 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 UBBP0CG47 229 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 UBCP0CG48 685 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms