RNA–Protein interactions for RNA: ENST00000329553.2

RIPPLY3-201, Transcript of ripply transcriptional repressor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RIPPLY3, Length 2,235 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIPPLY3-201ENST00000329553 GID4Q8IVV7 300 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 UBQLNLQ8IYU4 475 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 ZNF160Q9HCG1 818 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 KLRF1Q9NZS2 232 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 EXOGQ9Y2C4 368 aaKnown RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 GRIP1Q9Y3R0 1128 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 HRH3Q9Y5N1 445 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 TMED7-TICAM2A0A0A6YYA0 188 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 NSG1A0A0A6YYJ2 146 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 IGHEP01854 428 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 HIST1H1CP16403 213 aaKnown RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 AQP2P41181 271 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 HTR3AP46098 478 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 RFX2P48378 723 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 POLR2HP52434 150 aaKnown RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR2B6P58173 313 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 GPR50Q13585 617 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 TRIP6Q15654 476 aaKnown RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 GLYR1Q49A26 553 aaPredicted RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 HES3Q5TGS1 186 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR52E2Q8NGJ4 325 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 SPACA9Q96E40 222 aaPredicted RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 DNAJA3Q96EY1 480 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 TPK1Q9H3S4 243 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 ISYNA1Q9NPH2 558 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 NRIP3Q9NQ35 241 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 FBXL4Q9UKA2 621 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 FARSAQ9Y285 508 aaKnown RBP18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 TMED7Q9Y3B3 224 aa18.38■□□□□ 0.53
RIPPLY3-201ENST00000329553 SDK2Q58EX2 2172 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 ANKUB1A6NFN9 424 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 CLUP10909 449 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 ZNF3P17036 446 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 MYL12AP19105 171 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 PRPS1P60891 318 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 ZNF791Q3KP31 576 aaPredicted RBP18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 KLHL12Q53G59 568 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 GRINAQ7Z429 371 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 PPP1R32Q7Z5V6 425 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR4K13Q8NH42 304 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 TM9SF4Q92544 642 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 NPAS1Q99742 590 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 MED18Q9BUE0 208 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR51V1Q9H2C8 321 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 PLEKHB1Q9UF11 243 aaPredicted RBP18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 HIF3AQ9Y2N7 669 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 SF3B6Q9Y3B4 125 aaKnown RBP18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 SPIN1Q9Y657 262 aaPredicted RBP18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 OTOGLQ3ZCN5 2332 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 A0A1W2PQ72 361 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 TMEM72A0PK05 275 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 CCNKO75909 580 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 RAB40ALP0C0E4 278 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 TCF15Q12870 199 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 TPBGQ13641 420 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 ZNF544Q6NX49 715 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 PIP4P1Q86T03 277 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 METTL7AQ9H8H3 244 aa18.37■□□□□ 0.53
RIPPLY3-201ENST00000329553 SUSD5O60279 629 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 IFNGP01579 166 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 LIMS3P0CW19 117 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 LIMS4P0CW20 117 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 IL7P13232 177 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 OTX2P32243 289 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 NKX2-5P52952 324 aaPredicted RBP18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 ERVK-25P63136 954 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 MXD1Q05195 221 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR2G6Q5TZ20 316 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 C22orf42Q6IC83 251 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 LHFPL3Q86UP9 236 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 LRRC75AQ8NAA5 344 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 SDR9C7Q8NEX9 313 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 KISS1RQ969F8 398 aaPredicted RBP18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 NEDD4LQ96PU5 975 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 GPX7Q96SL4 187 aaPredicted RBP18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 TEAD3Q99594 435 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 KATNB1Q9BVA0 655 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 MIXL1Q9H2W2 232 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 ABCB9Q9NP78 766 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 KLHL1Q9NR64 748 aa18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 RBMX2Q9Y388 322 aaKnown RBP18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 EXOSC1Q9Y3B2 195 aaKnown RBP18.36■□□□□ 0.53
RIPPLY3-201ENST00000329553 ARPC3O15145 178 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 SLC25A12O75746 678 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 BGLAPP02818 100 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 TSPAN19P0C672 248 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 ATP6V1E1P36543 226 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 NR4A2P43354 598 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 HNRNPA0Q13151 305 aaKnown RBP18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 EIF3IQ13347 325 aaKnown RBP18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 ARMC4Q5T2S8 1044 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 TMEM164Q5U3C3 297 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 ARSKQ6UWY0 536 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 SIRT6Q8N6T7 355 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR51G2Q8NGK0 314 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 OR6F1Q8NGZ6 308 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 TMEM234Q8WY98 164 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 TMEM203Q969S6 136 aa18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 ZNF486Q96H40 463 aaPredicted RBP18.35■□□□□ 0.53
RIPPLY3-201ENST00000329553 NCDNQ9UBB6 729 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms