RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 WISP3O95389 354 aaPredicted RBP17.85■□□□□ 0.45
USP48-201ENST00000308271 RAB6AP20340 208 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 TDGQ13569 410 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 ZNF628Q5EBL2 1059 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 FANCFQ9NPI8 374 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 SLC22A7Q9Y694 548 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 ZFC3H1O60293 1989 aaKnown RBP17.85■□□□□ 0.45
USP48-201ENST00000308271 PIGBOS1A0A0B4J2F0 54 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 OR2F2O95006 317 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 THBS1P07996 1170 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 YBX1P67809 324 aaKnown RBP17.85■□□□□ 0.45
USP48-201ENST00000308271 OR2F1Q13607 317 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 FAM3DQ96BQ1 224 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 LUZP4Q9P127 313 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 SERTAD3Q9UJW9 196 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 FLVCR2Q9UPI3 526 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 SCN9AQ15858 1988 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 ZC3H12DA2A288 527 aaKnown RBP17.85■□□□□ 0.45
USP48-201ENST00000308271 CLDN2P57739 230 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 ESPNLQ6ZVH7 1005 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 MCEMP1Q8IX19 187 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 CMTM4Q8IZR5 234 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 UPRTQ96BW1 309 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 ZDHHC5Q9C0B5 715 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 WDR76Q9H967 626 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 CERS4Q9HA82 394 aa17.85■□□□□ 0.45
USP48-201ENST00000308271 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.85■□□□□ 0.45
USP48-201ENST00000308271 VSTM2BA6NLU5 285 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 TAS2R20P59543 309 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 NKX6-1P78426 367 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 PPA1Q15181 289 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 LCN10Q6JVE6 187 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 RSPO2Q6UXX9 243 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 TRAPPC6BQ86SZ2 158 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 TMEM200AQ86VY9 491 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 NAXEQ8NCW5 288 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 EVA1BQ9NVM1 165 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 TAS2R5Q9NYW4 299 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 UBE2J1Q9Y385 318 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 CCL27Q9Y4X3 112 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 ZNF593O00488 134 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 GLCEO94923 617 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 DIRAS3O95661 229 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 F13BP05160 661 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 POU3F4P49335 361 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 HCCSP53701 268 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 EOGTQ5NDL2 527 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 H3F3CQ6NXT2 135 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 UNQ6126/PRO20091Q6UXV3 157 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 NDUFAF7Q7L592 441 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 OR51T1Q8NGJ9 327 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 PFN4Q8NHR9 129 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 SMIM19Q96E16 107 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 PLEKHB1Q9UF11 243 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 A4GNTQ9UNA3 340 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 LOC100289279A0A1B0GTE1 492 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 NID1P14543 1247 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 ZP3P21754 424 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 EMP2P54851 167 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 RUNX3Q13761 415 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 ZNF674Q2M3X9 581 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 ACTBL2Q562R1 376 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 DPY19L4Q7Z388 723 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 GKN2Q86XP6 184 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 LRFN5Q96NI6 719 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 RNF215Q9Y6U7 377 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 TMEM269A0A1B0GVZ9 245 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 RAB5CP51148 216 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 C19orf57Q0VDD7 668 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 SQSTM1Q13501 440 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 RTN4RL1Q86UN2 441 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 LIX1LQ8IVB5 337 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 LSMEM1Q8N8F7 131 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 ZNF511Q8NB15 262 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 DVL3Q92997 716 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 OR5B12Q96R08 314 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 SMCO4Q9NRQ5 59 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 UBQLN4Q9NRR5 601 aa17.84■□□□□ 0.45
USP48-201ENST00000308271 ATXN7L1Q9ULK2 861 aaPredicted RBP17.84■□□□□ 0.45
USP48-201ENST00000308271 CNTRLQ7Z7A1 2325 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 IFITM5A6NNB3 132 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 F3P13726 295 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 CLDN6P56747 220 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 CDK5Q00535 292 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 B4GALNT1Q00973 533 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 AKR1C8PQ5T2L2 129 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 ADAMTSL4Q6UY14 1074 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 WDSUB1Q8N9V3 476 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 TTC9Q92623 222 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 C10orf90Q96M02 699 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 ST6GALNAC5Q9BVH7 336 aa17.83■□□□□ 0.45
USP48-201ENST00000308271 NXF2Q9GZY0 626 aaKnown RBP17.83■□□□□ 0.45
USP48-201ENST00000308271 TMEM127O75204 238 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 CD14P08571 375 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 ACSM4P0C7M7 580 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 CDK5R1Q15078 307 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 KLHDC7BQ96G42 594 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 ISG20L2Q9H9L3 353 aaKnown RBP17.83■□□□□ 0.44
USP48-201ENST00000308271 B3GAT2Q9NPZ5 323 aa17.83■□□□□ 0.44
USP48-201ENST00000308271 TRAV1-2A0A0B4J238 106 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms