RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 YOD1Q5VVQ6 348 aaPredicted RBP15.17■□□□□ 0.02
VPS54-201ENST00000272322 OR8H1Q8NGG4 311 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 GPR119Q8TDV5 335 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 FAM131CQ96AQ9 280 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 SOSTQ9BQB4 213 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 OR11A1Q9GZK7 315 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 DENND4AQ7Z401 1863 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 FAM172BPA6NC97 362 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 PIN1P1O15428 100 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 ICOSLGO75144 302 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 OC90Q02509 493 aaPredicted RBP15.17■□□□□ 0.02
VPS54-201ENST00000272322 FGFBP1Q14512 234 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 ETFDHQ16134 617 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 MEP1BQ16820 701 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 LIPNQ5VXI9 398 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 CMTM4Q8IZR5 234 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 C14orf105Q9NVL8 296 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 CLDN16Q9Y5I7 305 aa15.17■□□□□ 0.02
VPS54-201ENST00000272322 A0A087WUJ7 227 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 A0A1W2PPC4 97 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 CHURC1-FNTBB4DL54 471 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 FNTBP49356 437 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 CLDN20P56880 219 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 LTBQ06643 244 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 DMRTC1Q5HYR2 192 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 PM20D2Q8IYS1 436 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 HS3ST3A1Q9Y663 406 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 FRYQ5TBA9 3013 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 RHPN2P1A8MT19 583 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 GMDSO60547 372 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 AK1P00568 194 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 SRMP19623 302 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 SNTA1Q13424 505 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 RPL13AP3Q6NVV1 102 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 ZNF687Q8N1G0 1237 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 C1orf216Q8TAB5 229 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 AKAP1Q92667 903 aaKnown RBP eCLIP15.16■□□□□ 0.02
VPS54-201ENST00000272322 SMIM19Q96E16 107 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 RNF170Q96K19 258 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 PDE7BQ9NP56 450 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 RXFP3Q9NSD7 469 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 GRHPRQ9UBQ7 328 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 IGKV1D-42A0A075B6H8 117 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 NPR2P20594 1047 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 TMEM255AQ5JRV8 349 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 LRRN1Q6UXK5 716 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 CHRDL2Q6WN34 429 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 TRILQ7L0X0 811 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 MDGA2Q7Z553 956 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 TMPRSS12Q86WS5 348 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 AMELYQ99218 206 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 LPAR4Q99677 370 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 DPYSL5Q9BPU6 564 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 G6PC3Q9BUM1 346 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 IRF2BPLQ9H1B7 796 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 LIN7BQ9HAP6 207 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 MKL2Q9ULH7 1088 aa15.16■□□□□ 0.02
VPS54-201ENST00000272322 OR5K4A6NMS3 321 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 UTS2O95399 124 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 TCRBP04435 133 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 S100A1P23297 94 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 RPL6Q02878 288 aaKnown RBP15.15■□□□□ 0.02
VPS54-201ENST00000272322 LGALS3BPQ08380 585 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 LANCL3Q6ZV70 420 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 SLC7A5P2Q9GIP4 190 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 NPAP1Q9NZP6 1156 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 SHISA7A6NL88 538 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 GATBO75879 557 aaKnown RBP15.15■□□□□ 0.02
VPS54-201ENST00000272322 OR2T7P0C7T2 308 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 UBL4AP11441 157 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 MST1P26927 711 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 BLKP51451 505 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 GPR143P51810 404 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 RPS11P62280 158 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS54-201ENST00000272322 RPL18Q07020 188 aaKnown RBP15.15■□□□□ 0.02
VPS54-201ENST00000272322 BIKQ13323 160 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 MAB21L1Q13394 359 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 ZCCHC12Q6PEW1 402 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 MS4A15Q8N5U1 240 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 ZNF676Q8N7Q3 588 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.15■□□□□ 0.02
VPS54-201ENST00000272322 OR2T27Q8NH04 317 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 TRIM63Q969Q1 353 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 KCNJ15Q99712 375 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 MARVELD1Q9BSK0 173 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 ZNF576Q9H609 170 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 HOXC4P09017 264 aaPredicted RBP15.15■□□□□ 0.02
VPS54-201ENST00000272322 SLC6A1P30531 599 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 DIO1P49895 249 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 ACSM1Q08AH1 577 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 MELKQ14680 651 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 PRTGQ2VWP7 1150 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 YIPF5Q969M3 257 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 ZMAT3Q9HA38 289 aaKnown RBP15.15■□□□□ 0.02
VPS54-201ENST00000272322 MGAT4AQ9UM21 535 aa15.15■□□□□ 0.02
VPS54-201ENST00000272322 NOTOA8MTQ0 251 aa15.14■□□□□ 0.01
VPS54-201ENST00000272322 SHISA8B8ZZ34 492 aa15.14■□□□□ 0.01
VPS54-201ENST00000272322 KHDRBS3O75525 346 aaKnown RBP15.14■□□□□ 0.01
VPS54-201ENST00000272322 DHFRP00374 187 aa15.14■□□□□ 0.01
VPS54-201ENST00000272322 HIST1H2ABP04908 130 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms