RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ELOA3BQ3SY89 546 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 ZNF542PQ5EBM4 170 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 SLC6A19Q695T7 634 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 TAF8Q7Z7C8 310 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 ELOA3Q8NG57 546 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 MOSPD2Q8NHP6 518 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 RPS4Y2Q8TD47 263 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 ZNF436Q9C0F3 470 aaPredicted RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 SLITRK2Q9H156 845 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 PRTFDC1Q9NRG1 225 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 ANKRD10Q9NXR5 420 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 FLVCR2Q9UPI3 526 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 YBX2Q9Y2T7 364 aaKnown RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 A0A1B0GTQ1 180 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 RPP14O95059 124 aaKnown RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 TACSTD2P09758 323 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 CT45A8P0DMV1 189 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 CT45A9P0DMV2 189 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 CLDN12P56749 244 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 SKP1P63208 163 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 SNTA1Q13424 505 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 LGALSLQ3ZCW2 172 aaPredicted RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 CT45A2Q5DJT8 189 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 EID2Q8N6I1 236 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 OR11G2Q8NGC1 345 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 OR2T35Q8NGX2 323 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 C16orf52Q8NHV5 167 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 SUN5Q8TC36 379 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 Q96M85 177 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 GPX7Q96SL4 187 aaPredicted RBP17.1■□□□□ 0.33
CPSF3-201ENST00000238112 MRI1Q9BV20 369 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 OR10A4Q9H209 315 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 HEXA-AS1Q9H8Q6 139 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 TCF7L1Q9HCS4 588 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 ERVK-19Q9WJR5 959 aa17.1■□□□□ 0.33
CPSF3-201ENST00000238112 LINC00862A6NCI5 91 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 CLDN4O14493 209 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 TGM6O95932 706 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 SSTR2P30874 369 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 RABIFP47224 123 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ZP1P60852 638 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 HHEXQ03014 270 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ERV3-1Q14264 604 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 TMEM69Q5SWH9 247 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 LINC01590Q5TEZ4 76 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 MCATQ8IVS2 390 aaKnown RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ZNF595Q8IYB9 648 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ZNF440Q8IYI8 595 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 SLC22A18ASQ8N1D0 253 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ARHGEF39Q8N4T4 335 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 C19orf47Q8N9M1 422 aaKnown RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ZNF511Q8NB15 262 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 AVL9Q8NBF6 648 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 C1orf216Q8TAB5 229 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 SYNPRQ8TBG9 265 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 RGP1Q92546 391 aaPredicted RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 PIGKQ92643 395 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 SORCS2Q96PQ0 1159 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 DPCDQ9BVM2 203 aaPredicted RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 PBX4Q9BYU1 374 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 TSPAN10Q9H1Z9 355 aaPredicted RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 POMT2Q9UKY4 750 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 FOXS1O43638 330 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 SULT1B1O43704 296 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 ICMTO60725 284 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 IFNA7P01567 189 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 AQP2P41181 271 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 CDKN2AP42771 156 aaKnown RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 GPR3P46089 330 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 VEGFCP49767 419 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 MAT1AQ00266 395 aaKnown RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 METTL11BQ5VVY1 283 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 GPR174Q9BXC1 333 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 OR10A5Q9H207 317 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 METTL17Q9H7H0 456 aaPredicted RBP17.09■□□□□ 0.33
CPSF3-201ENST00000238112 HS3ST3A1Q9Y663 406 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 TICRRQ7Z2Z1 1910 aa17.09■□□□□ 0.33
CPSF3-201ENST00000238112 PRR32B1ATL7 298 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 RAB40ALP0C0E4 278 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 OR8G3PP0DMU2 310 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 MAPK3P27361 379 aaPredicted RBP17.08■□□□□ 0.33
CPSF3-201ENST00000238112 LCN1P31025 176 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 BTG2P78543 158 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 RPL6Q02878 288 aaKnown RBP17.08■□□□□ 0.33
CPSF3-201ENST00000238112 TMEM255AQ5JRV8 349 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 ELFN2Q5R3F8 820 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 APOOLQ6UXV4 268 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 RFPL4BQ6ZWI9 263 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 SLC16A9Q7RTY1 509 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 KCTD20Q7Z5Y7 419 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 GATSQ8NAP1 163 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 RAB40AQ8WXH6 277 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 NANSQ9NR45 359 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 KLK11Q9UBX7 282 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 NPTNQ9Y639 398 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 FKBP7Q9Y680 259 aa17.08■□□□□ 0.33
CPSF3-201ENST00000238112 IGKV1D-42A0A075B6H8 117 aa17.08■□□□□ 0.32
CPSF3-201ENST00000238112 TMEM72A0PK05 275 aa17.08■□□□□ 0.32
CPSF3-201ENST00000238112 OR2W5A6NFC9 320 aa17.08■□□□□ 0.32
CPSF3-201ENST00000238112 TOXO94900 526 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms