RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NIPAL3Q6P499 406 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 C12orf54Q6X4T0 127 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 LRRC74BQ6ZQY2 392 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 MEX3DQ86XN8 651 aaKnown RBP16.82■□□□□ 0.28
CLN3-262ENST00000637699 CADM2Q8N3J6 435 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 SVOPLQ8N434 492 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.82■□□□□ 0.28
CLN3-262ENST00000637699 NEU4Q8WWR8 484 aaPredicted RBP16.82■□□□□ 0.28
CLN3-262ENST00000637699 PIF1Q9H611 641 aa16.82■□□□□ 0.28
CLN3-262ENST00000637699 ARPC4-TTLL3A0A0A6YYG9 625 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 UPK3AO75631 287 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 IGLV1-44P01699 117 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 DBIP07108 87 aaKnown RBP16.81■□□□□ 0.28
CLN3-262ENST00000637699 CELA3BP08861 270 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 NPR2P20594 1047 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 P2RY4P51582 365 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 C3orf36Q3SXR2 165 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 SPATA21Q7Z572 469 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 NUP37Q8NFH4 326 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 HPS1Q92902 700 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 TESCQ96BS2 214 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 ZIM3Q96PE6 472 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 DOK1Q99704 481 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 PLA2G12AQ9BZM1 189 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 OCEL1Q9H607 264 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 FBXO9Q9UK97 447 aaPredicted RBP16.81■□□□□ 0.28
CLN3-262ENST00000637699 RAB21Q9UL25 225 aa16.81■□□□□ 0.28
CLN3-262ENST00000637699 CCDC154A6NI56 674 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 VSTM5A8MXK1 200 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 LYNX1G3V0Z9 82 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 LYNX1P0DP58 116 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 NR2F1P10589 423 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 IFNGR1P15260 489 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 RPS4Y1P22090 263 aaKnown RBP16.8■□□□□ 0.28
CLN3-262ENST00000637699 S100A3P33764 101 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ETV4P43268 484 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ROR2Q01974 943 aaKnown RBP16.8■□□□□ 0.28
CLN3-262ENST00000637699 CCNIQ14094 377 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 TRIP10Q15642 601 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ADRM1Q16186 407 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 FAM174BQ3ZCQ3 159 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 PRAMEF8Q5VWM4 474 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 PRAMEF7Q5VXH5 474 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 RINLQ6ZS11 566 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 MYPOPQ86VE0 399 aaPredicted RBP16.8■□□□□ 0.28
CLN3-262ENST00000637699 EPHX4Q8IUS5 362 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 NUDCD3Q8IVD9 361 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ZNF440Q8IYI8 595 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ZNF786Q8N393 782 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ZNF781Q8N8C0 355 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 PNPT1Q8TCS8 783 aaKnown RBP16.8■□□□□ 0.28
CLN3-262ENST00000637699 MAGEE2Q8TD90 523 aaPredicted RBP16.8■□□□□ 0.28
CLN3-262ENST00000637699 UBASH3BQ8TF42 649 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ZBTB9Q96C00 473 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ZNF317Q96PQ6 595 aaPredicted RBP16.8■□□□□ 0.28
CLN3-262ENST00000637699 NELFAQ9H3P2 528 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 ZNF442Q9H7R0 627 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 DYNLRB1Q9NP97 96 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 PCDHB14Q9Y5E9 798 aa16.8■□□□□ 0.28
CLN3-262ENST00000637699 TMEM129A0AVI4 362 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 WDR91A4D1P6 747 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 OR6C65A6NJZ3 312 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 A8MVM7 634 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 VAMP5O95183 116 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 CFPP27918 469 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 CDH15P55291 814 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 NME5P56597 212 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 ARF1P84077 181 aaKnown RBP16.79■□□□□ 0.28
CLN3-262ENST00000637699 KRT71Q3SY84 523 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 COX20Q5RI15 118 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 VRK2Q86Y07 508 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 PEX5LQ8IYB4 626 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 KDM8Q8N371 416 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 PKNOX2Q96KN3 472 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 CCDC115Q96NT0 180 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 ANKRD27Q96NW4 1050 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 PANX1Q96RD7 426 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 BTNL2Q9UIR0 455 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 METRNQ9UJH8 293 aa16.79■□□□□ 0.28
CLN3-262ENST00000637699 E9PBE3 544 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 FRS3O43559 492 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 IGKV3-15P01624 115 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 GSNP06396 782 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 ADRA2AP08913 450 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 CBR1P16152 277 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 ACAA2P42765 397 aaKnown RBP16.78■□□□□ 0.28
CLN3-262ENST00000637699 CDKN2CP42773 168 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 ANXA11P50995 505 aaKnown RBP16.78■□□□□ 0.28
CLN3-262ENST00000637699 CLNS1AP54105 237 aaKnown RBP16.78■□□□□ 0.28
CLN3-262ENST00000637699 COPZ1P61923 177 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 RIN1Q13671 783 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 DPY19L1Q2PZI1 675 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 C1orf140Q5VVS0 124 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 WBP2NLQ6ICG8 309 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 ZNF621Q6ZSS3 439 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 CDK20Q8IZL9 346 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 TRIML2Q8N7C3 387 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 FAM169BQ8N8A8 192 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 TEX37Q96LM6 180 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 LINC00470Q9BZP3 86 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms