RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CBLP22681 906 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 GUSBP1Q15486 140 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 WDR88Q6ZMY6 472 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 CCDC121Q6ZUS5 278 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 BTLAQ7Z6A9 289 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 GPAT4Q86UL3 456 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 CCDC103Q8IW40 242 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 TAAR8Q969N4 342 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 STARD4Q96DR4 205 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 ASB9Q96DX5 294 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 PSD2Q9BQI7 771 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 ASPNQ9BXN1 380 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 A4GNTQ9UNA3 340 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 ENPP4Q9Y6X5 453 aa16.1■□□□□ 0.17
CLN3-239ENST00000628023 AQP7P3A6NL99 342 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 UQCRC1P31930 480 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 RBM34P42696 430 aaKnown RBP16.09■□□□□ 0.17
CLN3-239ENST00000628023 RIPPLY3P57055 190 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 KRTAP10-9P60411 292 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 H3F3AP84243 136 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 IL1RL1Q01638 556 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 MFSD13AQ14CX5 517 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 TMEM225Q6GV28 225 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 LCN8Q6JVE9 175 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 STK32CQ86UX6 486 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 OFCC1Q8IZS5 231 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 TMEM99Q8N816 258 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 TMEM255BQ8WV15 326 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 ZNF300Q96RE9 604 aaPredicted RBP16.09■□□□□ 0.17
CLN3-239ENST00000628023 RBM24Q9BX46 236 aaKnown RBP16.09■□□□□ 0.17
CLN3-239ENST00000628023 SLC19A3Q9BZV2 496 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 OPN3Q9H1Y3 402 aaPredicted RBP16.09■□□□□ 0.17
CLN3-239ENST00000628023 BCO1Q9HAY6 547 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 RHCGQ9UBD6 479 aa16.09■□□□□ 0.17
CLN3-239ENST00000628023 ZNF724A8MTY0 619 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 ZNF814B7Z6K7 855 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 FTCDNL1E5RQL4 147 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 M0R082 166 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 MSTNO14793 375 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 RAMP1O60894 148 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 NQO1P15559 274 aaKnown RBP16.08■□□□□ 0.16
CLN3-239ENST00000628023 ITGA2P17301 1181 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 IGFBP2P18065 325 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 GRPRP30550 384 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 MS4A2Q01362 244 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 TRAM2Q15035 370 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 PDK3Q15120 406 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 LINC00114Q6XXX2 140 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 GALNT5Q7Z7M9 940 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 NKAIN4Q8IVV8 208 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 OR6S1Q8NH40 331 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 ZNF417Q8TAU3 575 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 TMEM239Q8WW34 195 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 ZNF775Q96BV0 537 aaPredicted RBP16.08■□□□□ 0.16
CLN3-239ENST00000628023 HS6ST2Q96MM7 605 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 ZNF587Q96SQ5 575 aaPredicted RBP16.08■□□□□ 0.16
CLN3-239ENST00000628023 PRSS27Q9BQR3 290 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 KLHL4Q9C0H6 718 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 KCNN3Q9UGI6 736 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 MED31Q9Y3C7 131 aa16.08■□□□□ 0.16
CLN3-239ENST00000628023 HCFC1P51610 2035 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 CSMD2Q7Z408 3487 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 ZNF716A6NP11 495 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 EBAG9O00559 213 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 GPR171O14626 319 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 CH25HO95992 272 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 MT-ATP6P00846 226 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 BGLAPP02818 100 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 FABP3P05413 133 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 CD8BP10966 210 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 UMPSP11172 480 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 RHCEP18577 417 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 VLDLRP98155 873 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 TFF3Q07654 80 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 EXOC3L2Q2M3D2 409 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 NUFIP2Q7Z417 695 aaKnown RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 DMRTC2Q8IXT2 367 aaPredicted RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 RNASE6Q93091 150 aaKnown RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 SEPHS2Q99611 448 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 ZNF426Q9BUY5 554 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 NPDC1Q9NQX5 325 aaPredicted RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 NDUFAF4Q9P032 175 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 FOXD3Q9UJU5 478 aaPredicted RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 ING1Q9UK53 422 aaPredicted RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 RASD1Q9Y272 281 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 NOSIPQ9Y314 301 aaKnown RBP16.07■□□□□ 0.16
CLN3-239ENST00000628023 CORINQ9Y5Q5 1042 aa16.07■□□□□ 0.16
CLN3-239ENST00000628023 IGKV3D-15A0A087WSY6 115 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 FFAR1O14842 300 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 GSC2O15499 205 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 DIRAS1O95057 198 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 VAMP5O95183 116 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 H1F0P07305 194 aaKnown RBP16.06■□□□□ 0.16
CLN3-239ENST00000628023 SLC16A1P53985 500 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 UGT2B15P54855 530 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 TRAP1Q12931 704 aaKnown RBP16.06■□□□□ 0.16
CLN3-239ENST00000628023 PMS2P3Q13401 168 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 FLOT2Q14254 428 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 FGD3Q5JSP0 725 aa16.06■□□□□ 0.16
CLN3-239ENST00000628023 ZNF730Q6ZMV8 503 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms