RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TRDCB7Z8K6 153 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 MBTPS2O43462 519 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 CXCL13O43927 109 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 STAMBPO95630 424 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 BAG2O95816 211 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 MBD3O95983 291 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 ARF4P18085 180 aaPredicted RBP1.08□□□□□ -2.24
SCN1A-208ENST00000625916 PGAM1P18669 254 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 HPCAL1P37235 193 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 PTGDSP41222 190 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 GPM6AP51674 278 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 PLA2G16P53816 162 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 PKNOX1P55347 436 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 MXD4Q14582 209 aaPredicted RBP1.08□□□□□ -2.24
SCN1A-208ENST00000625916 GNMTQ14749 295 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 BCL7AQ4VC05 210 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 CCDC184Q52MB2 194 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 MARCH8Q5T0T0 291 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 GPRC6AQ5T6X5 926 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 CBLN3Q6UW01 205 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 Q6ZR03 302 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 SLC26A11Q86WA9 606 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 PGAM4Q8N0Y7 254 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 MRPL43Q8N983 215 aaKnown RBP1.08□□□□□ -2.24
SCN1A-208ENST00000625916 STXBP6Q8NFX7 210 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 OR4F15Q8NGB8 312 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 OR4K14Q8NGD5 310 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 ZFP90Q8TF47 636 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 FAM111AQ96PZ2 611 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 ALG12Q9BV10 488 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 ACTR6Q9GZN1 396 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 WDR76Q9H967 626 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 ZFP14Q9HCL3 533 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 NGBQ9NPG2 151 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 QPCTLQ9NXS2 382 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 GNG12Q9UBI6 72 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 STAP1Q9ULZ2 295 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 COPS3Q9UNS2 423 aa1.08□□□□□ -2.24
SCN1A-208ENST00000625916 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.08□□□□□ -2.24
SCN1A-208ENST00000625916 COL27A1Q8IZC6 1860 aaPredicted RBP1.07□□□□□ -2.24
SCN1A-208ENST00000625916 TENM1Q9UKZ4 2725 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 NSG1A0A0A6YYJ2 146 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 NPIPA7E9PJI5 369 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 RPL36A-HNRNPH2H7BZ11 118 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 PEX7O00628 323 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 CTAGE5O15320 804 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 SLC31A2O15432 143 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 SCGB2A1O75556 95 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 PTBP3O95758 552 aaKnown RBP1.07□□□□□ -2.24
SCN1A-208ENST00000625916 MT-ND3P03897 115 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 NPIPA8P0DM63 369 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 COX5AP20674 150 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 CMA1P23946 247 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 BTCP35070 178 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 ATP6V1E1P36543 226 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 RABIFP47224 123 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 STARD6P59095 220 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 GMFBP60983 142 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 HMGCS1Q01581 520 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 KLHL30Q0D2K2 578 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 KIAA0087Q14695 138 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 COX19Q49B96 90 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 HSDL2Q6YN16 418 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 SHISA6Q6ZSJ9 500 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 CLDN19Q8N6F1 224 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 FAM86B1Q8N7N1 296 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 SYNPRQ8TBG9 265 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 RAET1EQ8TD07 263 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 CMTM7Q96FZ5 175 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 TMEM237Q96Q45 408 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 KCNK16Q96T55 309 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 ECSITQ9BQ95 431 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 TMEM246Q9BRR3 403 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 MRPL13Q9BYD1 178 aaKnown RBP1.07□□□□□ -2.24
SCN1A-208ENST00000625916 DEFB127Q9H1M4 99 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 SRMSQ9H3Y6 488 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 IL26Q9NPH9 171 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 KCNIP1Q9NZI2 227 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 NPIPA1Q9UND3 350 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 MRPS33Q9Y291 106 aaKnown RBP1.07□□□□□ -2.24
SCN1A-208ENST00000625916 CARMIL3Q8ND23 1372 aa1.07□□□□□ -2.24
SCN1A-208ENST00000625916 PCNX2A6NKB5 2137 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 ABCC9O60706 1549 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 A0A1W2PP18 115 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 PRSS37A4D1T9 235 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RBMY1BA6NDE4 496 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RBMY1EA6NEQ0 496 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 C12orf71A8MTZ7 269 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CD5LO43866 347 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 IGLV2-23P01705 113 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RBMY1DP0C7P1 496 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 RBMY1A1P0DJD3 496 aaKnown RBP1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CNR1P21554 472 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CYP2F1P24903 491 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CCND2P30279 289 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 GYG1P46976 350 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 TDO2P48775 406 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 SPIBQ01892 262 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 REG3AQ06141 175 aa1.06□□□□□ -2.24
SCN1A-208ENST00000625916 CYTH1Q15438 398 aa1.06□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms