RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 AP3S2P59780 193 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 TMEM44Q2T9K0 475 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 LCTLQ6UWM7 567 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 ZNF546Q86UE3 836 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 ZNF511Q8NB15 262 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 PXT1Q8NFP0 134 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 OR7G2Q8NG99 324 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 KISS1RQ969F8 398 aaPredicted RBP12.12□□□□□ -0.47
MSH6-214ENST00000616033 TRIM43Q96BQ3 446 aaPredicted RBP12.12□□□□□ -0.47
MSH6-214ENST00000616033 AHCYL2Q96HN2 611 aaKnown RBP12.12□□□□□ -0.47
MSH6-214ENST00000616033 NMNAT3Q96T66 252 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 AICDAQ9GZX7 198 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 KRCC1Q9NPI7 259 aaPredicted RBP12.12□□□□□ -0.47
MSH6-214ENST00000616033 GSN-AS1Q9NRJ2 163 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 SEC16AO15027 2179 aa12.12□□□□□ -0.47
MSH6-214ENST00000616033 F5P12259 2224 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 A0A1B0GV90 55 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 GRXCR1A8MXD5 290 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 DNASE2O00115 360 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 LDB3O75112 727 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 EIF3GO75821 320 aaKnown RBP eCLIP12.11□□□□□ -0.47
MSH6-214ENST00000616033 CST5P28325 142 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 BCL6P41182 706 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 CCR2P41597 374 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 SNRPNP63162 240 aaKnown RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 CSNK1G2P78368 415 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 DUSP5Q16690 384 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 TRMT12Q53H54 448 aaKnown RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 UBE2NLQ5JXB2 153 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 ZNF660Q6AZW8 331 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 HTR3DQ70Z44 454 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 LINC01555Q8NAE3 123 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 LMF1Q96S06 567 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 PFDN5Q99471 154 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 ABRACLQ9P1F3 81 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 S100A6P06703 90 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 OR8G3PP0DMU2 310 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 CASP6P55212 293 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 RD3Q7Z3Z2 195 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 RANBP3LQ86VV4 465 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 ZNRF4Q8WWF5 429 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 NR4A3Q92570 626 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 IRF7Q92985 503 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 DTD2Q96FN9 168 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 ANKRD19PQ9H560 264 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 MED31Q9Y3C7 131 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 NPFFR2Q9Y5X5 522 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 TRAV18A0A075B6X5 111 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 A0A1B0GUH1 482 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 DNAJB6O75190 326 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 HIST1H2ABP04908 130 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 ASGR2P07307 311 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 C8AP07357 584 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 GIPP09681 153 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 SPP1P10451 314 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 SELLP14151 372 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 NT5EP21589 574 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 HIST1H1TP22492 207 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 HTR2AP28223 471 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 DLX5P56178 289 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 UBE2IP63279 158 aaKnown RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 EXOSC7Q15024 291 aaKnown RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 TEAD2Q15562 447 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 NKPD1Q17RQ9 610 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 DEFB134Q4QY38 66 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 FNDC3BQ53EP0 1204 aaKnown RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 HIST3H2AQ7L7L0 130 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 SFTPA1Q8IWL2 248 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 CMIPQ8IY22 773 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 OR56A1Q8NGH5 318 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 SETD7Q8WTS6 366 aaKnown RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 HIST1H2ACQ93077 130 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 SLC25A38Q96DW6 304 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 RHOVQ96L33 236 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 TGIF2Q9GZN2 237 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 IL21RQ9HBE5 538 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 OPN4Q9UHM6 478 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 ING1Q9UK53 422 aaPredicted RBP12.11□□□□□ -0.47
MSH6-214ENST00000616033 SPAG17Q6Q759 2223 aa12.11□□□□□ -0.47
MSH6-214ENST00000616033 M0QYG6 137 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 RBBP9O75884 186 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 FGF18O76093 207 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 TGM6O95932 706 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 HIST1H1CP16403 213 aaKnown RBP12.1□□□□□ -0.47
MSH6-214ENST00000616033 ARFIP1P53367 373 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 SQSTM1Q13501 440 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 ALKBH1Q13686 389 aaKnown RBP12.1□□□□□ -0.47
MSH6-214ENST00000616033 RAB12Q6IQ22 244 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 TSSK4Q6SA08 328 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 OR6V1Q8N148 313 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 OR4C16Q8NGL9 310 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 BCL2L10Q9HD36 194 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 NRIP3Q9NQ35 241 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 NPDC1Q9NQX5 325 aaPredicted RBP12.1□□□□□ -0.47
MSH6-214ENST00000616033 ANAPC1Q9H1A4 1944 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 MDC1Q14676 2089 aaKnown RBP12.1□□□□□ -0.47
MSH6-214ENST00000616033 TVP23AA6NH52 213 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 A8MXK9 166 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 H7C1C5 153 aa12.1□□□□□ -0.47
MSH6-214ENST00000616033 BHLHE40O14503 412 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms