RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 NKIRAS1Q9NYS0 192 aa6.66□□□□□ -1.34
CUX1-219ENST00000606749 MOKQ9UQ07 419 aa6.66□□□□□ -1.34
CUX1-219ENST00000606749 IFT52Q9Y366 437 aa6.66□□□□□ -1.34
CUX1-219ENST00000606749 ABCA1O95477 2261 aa6.66□□□□□ -1.34
CUX1-219ENST00000606749 TLN2Q9Y4G6 2542 aa6.66□□□□□ -1.34
CUX1-219ENST00000606749 CHD3Q12873 2000 aaKnown RBP6.66□□□□□ -1.34
CUX1-219ENST00000606749 JMJD1CQ15652 2540 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 A0A096LPI6 279 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 TMEM229AB2RXF0 380 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 FTCDNL1E5RQL4 147 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 ATP6V1G2-DDX39BF2Z307 99 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 FRS3O43559 492 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 UPK3AO75631 287 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 KRT33AO76009 404 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 VAMP5O95183 116 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 F12P00748 615 aaPredicted RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 BMP2P12643 396 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 BMP4P12644 408 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 ETS2P15036 469 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 HOXB9P17482 250 aaPredicted RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 PAX7P23759 505 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SELENOPP49908 381 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 EFNA4P52798 201 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 EGR4Q05215 589 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 CHRNB3Q05901 458 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 LOXL1Q08397 574 aaPredicted RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 FADDQ13158 208 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SWI5Q1ZZU3 235 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 ZNF311Q5JNZ3 666 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 PRAMEF8Q5VWM4 474 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 PRAMEF7Q5VXH5 474 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 HMBOX1Q6NT76 420 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SLC2A7Q6PXP3 512 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 KLHL24Q6TFL4 600 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 CLEC2AQ6UVW9 174 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 LINGO2Q7L985 606 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 CXXC5Q7LFL8 322 aaKnown RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 EPHX4Q8IUS5 362 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 KDM8Q8N371 416 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 ZNF525Q8N782 197 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 OR1K1Q8NGR3 316 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SPATA3Q8NHX4 192 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 NANOS1Q8WY41 292 aaKnown RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 FAM168AQ92567 244 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 MAL2Q969L2 176 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SLC35B4Q969S0 331 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SLC25A36Q96CQ1 311 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 KTI12Q96EK9 354 aaPredicted RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 TNFRSF13CQ96RJ3 184 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 PTDSS2Q9BVG9 487 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 LINC00470Q9BZP3 86 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 CACYBPQ9HB71 228 aaKnown RBP6.65□□□□□ -1.34
CUX1-219ENST00000606749 OBP2BQ9NPH6 170 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 SLC25A37Q9NYZ2 338 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 RASD1Q9Y272 281 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 USH1CQ9Y6N9 552 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 PMF1-BGLAPU3KQ54 211 aa6.65□□□□□ -1.34
CUX1-219ENST00000606749 ARPC4-TTLL3A0A0A6YYG9 625 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 IGHV1-18A0A0C4DH31 117 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 OR6C65A6NJZ3 312 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 A8MV72 311 aaPredicted RBP6.64□□□□□ -1.35
CUX1-219ENST00000606749 ZNF587BE7ETH6 402 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 NR5A2O00482 541 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 FZD7O75084 574 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 LY6HO94772 140 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 ZNF432O94892 652 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 AHSA1O95433 338 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 TGDSO95455 350 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 LGI1O95970 557 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 PNMTP11086 282 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 HOXB1P14653 301 aaPredicted RBP6.64□□□□□ -1.35
CUX1-219ENST00000606749 SLC25A16P16260 332 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 ZNF43P17038 809 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 SERPINF1P36955 418 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 RPS5P46782 204 aaKnown RBP6.64□□□□□ -1.35
CUX1-219ENST00000606749 MRPL19P49406 292 aaKnown RBP6.64□□□□□ -1.35
CUX1-219ENST00000606749 IDH3AP50213 366 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 CLDN17P56750 224 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 VLDLRP98155 873 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 TMEM249Q2WGJ8 235 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 C3orf36Q3SXR2 165 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 TBRG1Q3YBR2 411 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 BEND6Q5SZJ8 279 aaPredicted RBP6.64□□□□□ -1.35
CUX1-219ENST00000606749 NIPAL3Q6P499 406 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 ANKRD16Q6P6B7 361 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 BLOC1S3Q6QNY0 202 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 C6orf89Q6UWU4 347 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 FUNDC1Q8IVP5 155 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 LSMEM1Q8N8F7 131 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 BBS10Q8TAM1 723 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 MAGEE2Q8TD90 523 aaPredicted RBP6.64□□□□□ -1.35
CUX1-219ENST00000606749 C10orf105Q8TEF2 133 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 PROX1Q92786 737 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 TAAR8Q969N4 342 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 OXGR1Q96P68 337 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 SLC38A2Q96QD8 506 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 RAD21L1Q9H4I0 556 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 SLC52A3Q9NQ40 469 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 SLAMF8Q9P0V8 285 aa6.64□□□□□ -1.35
CUX1-219ENST00000606749 CRNNQ9UBG3 495 aaPredicted RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms