RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 CA3P07451 260 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ITPKBP27987 946 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 PTH2RP49190 550 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 RAP2BP61225 183 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 TRAM1Q15629 374 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 NDUFAF6Q330K2 333 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 SLC35F2Q8IXU6 374 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 COX18Q8N8Q8 333 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 OR4E2Q8NGC2 313 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 SCARB1Q8WTV0 552 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 OR8D1Q8WZ84 308 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 LRRC46Q96FV0 321 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 C7orf50Q9BRJ6 194 aaKnown RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 ZNF416Q9BWM5 594 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 PCDHB16Q9NRJ7 776 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ANKRD10Q9NXR5 420 aa16.85■□□□□ 0.29
UPF1-210ENST00000600689 ING1Q9UK53 422 aaPredicted RBP16.85■□□□□ 0.29
UPF1-210ENST00000600689 PRUNE2Q8WUY3 3088 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 KRBOX1C9JBD0 128 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 GIPP09681 153 aaPredicted RBP16.84■□□□□ 0.29
UPF1-210ENST00000600689 CDK3Q00526 305 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 NNATQ16517 81 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 AMZ1Q400G9 498 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 METRNLQ641Q3 311 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 LRRN1Q6UXK5 716 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 NDUFAF7Q7L592 441 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 PAQR7Q86WK9 346 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 OR1S1Q8NH92 325 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 FGF13Q92913 245 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 MFFQ9GZY8 342 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 OR5V1Q9UGF6 321 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 GABARAPH6UMI1 98 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 GABRA1P14867 456 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 EN2P19622 333 aaPredicted RBP16.84■□□□□ 0.29
UPF1-210ENST00000600689 RAG2P55895 527 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 MAMSTRQ6ZN01 415 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 OR6V1Q8N148 313 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 ZNF511Q8NB15 262 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 WFIKKN2Q8TEU8 576 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 DUSP19Q8WTR2 217 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 ZNF681Q96N22 645 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 ADAT1Q9BUB4 502 aaKnown RBP16.84■□□□□ 0.29
UPF1-210ENST00000600689 MED11Q9P086 117 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 MYEF2Q9P2K5 600 aaKnown RBP16.84■□□□□ 0.29
UPF1-210ENST00000600689 C2orf16Q68DN1 1984 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 GON4LQ3T8J9 2241 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 KIAA1549LQ6ZVL6 1849 aa16.84■□□□□ 0.29
UPF1-210ENST00000600689 LOC100509620A0A075B734 347 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 GXYLT2A0PJZ3 443 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 TBC1D3BA6NDS4 549 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 VEGFDO43915 354 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 PRAF2O60831 178 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 CSN2P05814 226 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 OR8G3PP0DMU2 310 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 AP3S2P59780 193 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 NANOS3P60323 173 aaKnown RBP16.83■□□□□ 0.29
UPF1-210ENST00000600689 ELAVL3Q14576 367 aaKnown RBP16.83■□□□□ 0.29
UPF1-210ENST00000600689 SLC6A19Q695T7 634 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 RAB42Q8N4Z0 105 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 OR52E1Q8NGJ3 308 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 LINC00615Q96LM1 132 aaPredicted RBP16.83■□□□□ 0.29
UPF1-210ENST00000600689 ASB16Q96NS5 453 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 ULBP3Q9BZM4 244 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 PCBD2Q9H0N5 130 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 TAS2R3Q9NYW6 316 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 ZNF230Q9UIE0 474 aaPredicted RBP16.83■□□□□ 0.29
UPF1-210ENST00000600689 ACSL5Q9ULC5 683 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 OR10H1Q9Y4A9 318 aa16.83■□□□□ 0.29
UPF1-210ENST00000600689 GALR3O60755 368 aaPredicted RBP16.83■□□□□ 0.28
UPF1-210ENST00000600689 TFAP2EQ6VUC0 442 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 CMIPQ8IY22 773 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 C7orf61Q8IZ16 206 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 MUC20Q8N307 709 aaPredicted RBP16.83■□□□□ 0.28
UPF1-210ENST00000600689 LRRC25Q8N386 305 aaPredicted RBP16.83■□□□□ 0.28
UPF1-210ENST00000600689 ASB12Q8WXK4 309 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 SLC25A28Q96A46 364 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 CNN2Q99439 309 aaKnown RBP16.83■□□□□ 0.28
UPF1-210ENST00000600689 SLC38A3Q99624 504 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 DPYSL5Q9BPU6 564 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 RNF215Q9Y6U7 377 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 TRPM6Q9BX84 2022 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 TRAV1-2A0A0B4J238 106 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 EDDM13A0A1B0GTR0 161 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 DUXAA6NLW8 204 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 NGFRP08138 427 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 RAB28P51157 221 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 SRSF5Q13243 272 aaKnown RBP16.83■□□□□ 0.28
UPF1-210ENST00000600689 ZNF626Q68DY1 528 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 NRROSQ86YC3 692 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 RASD2Q96D21 266 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 MICU1Q9BPX6 476 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 TCF7L1Q9HCS4 588 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 TAS2R5Q9NYW4 299 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 OPN4Q9UHM6 478 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 GTF2A1LQ9UNN4 478 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 FOXJ3Q9UPW0 622 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 V9GY05 133 aa16.83■□□□□ 0.28
UPF1-210ENST00000600689 MCIDASD6RGH6 385 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 ZFPL1O95159 310 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 HIST1H2ABP04908 130 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms