RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 UCK2Q9BZX2 261 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 KLHL4Q9C0H6 718 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 EMC9Q9Y3B6 208 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 CORINQ9Y5Q5 1042 aa17.23■□□□□ 0.35
UPF1-209ENST00000600310 PCNX1Q96RV3 2341 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 HTR3EA5X5Y0 456 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 FAM90A27PA6NNH2 459 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 ZNF716A6NP11 495 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 ZNF724A8MTY0 619 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 KPNA4O00629 521 aaPredicted RBP17.22■□□□□ 0.35
UPF1-209ENST00000600310 YES1P07947 543 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 GRPRP30550 384 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 AGTR1P30556 359 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 SMIM11AP58511 58 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 SIRPAP78324 504 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 TMEM201Q5SNT2 666 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 VWA1Q6PCB0 445 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 BTLAQ7Z6A9 289 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 YTHDF3Q7Z739 585 aaKnown RBP17.22■□□□□ 0.35
UPF1-209ENST00000600310 SPATA24Q86W54 205 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 TUSC5Q8IXB3 177 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 C10orf53Q8N6V4 93 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 SCAIQ8N9R8 606 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 OR6K3Q8NGY3 331 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 PFN4Q8NHR9 129 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 ACOT11Q8WXI4 607 aaPredicted RBP17.22■□□□□ 0.35
UPF1-209ENST00000600310 UTP4Q969X6 686 aaKnown RBP17.22■□□□□ 0.35
UPF1-209ENST00000600310 MOGAT1Q96PD6 335 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 SF3B5Q9BWJ5 86 aaKnown RBP17.22■□□□□ 0.35
UPF1-209ENST00000600310 PIGMQ9H3S5 423 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 FKRPQ9H9S5 495 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 MRPL39Q9NYK5 338 aaKnown RBP17.22■□□□□ 0.35
UPF1-209ENST00000600310 B3GALT5Q9Y2C3 310 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 FLNCQ14315 2725 aa17.22■□□□□ 0.35
UPF1-209ENST00000600310 MED12LQ86YW9 2145 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 A0A087WUU8 490 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 TCRBV3S1A0A5B6 114 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 DHRS12A0PJE2 317 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 ENO4A6NNW6 628 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 LRRN3E7EW58 273 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 M0R082 166 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 VAMP5O95183 116 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 CH25HO95992 272 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 CGAP01215 116 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 HOXB6P17509 224 aaKnown RBP17.21■□□□□ 0.35
UPF1-209ENST00000600310 CBLP22681 906 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 SLC17A1Q14916 467 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 TMEM225Q6GV28 225 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 H1FNTQ75WM6 255 aaPredicted RBP17.21■□□□□ 0.35
UPF1-209ENST00000600310 MAMDC2Q7Z304 686 aaPredicted RBP17.21■□□□□ 0.35
UPF1-209ENST00000600310 RNF113BQ8IZP6 322 aaKnown RBP17.21■□□□□ 0.35
UPF1-209ENST00000600310 ADPRHL1Q8NDY3 354 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 ZNF417Q8TAU3 575 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 CANT1Q8WVQ1 401 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 ZNF587Q96SQ5 575 aaPredicted RBP17.21■□□□□ 0.35
UPF1-209ENST00000600310 ASPNQ9BXN1 380 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 CHST11Q9NPF2 352 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 KCNJ16Q9NPI9 418 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 C20orf141Q9NUB4 165 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 JKAMPQ9P055 326 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 EMC3Q9P0I2 261 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 C6orf203Q9P0P8 240 aaPredicted RBP17.21■□□□□ 0.35
UPF1-209ENST00000600310 RASD1Q9Y272 281 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 TESMINQ9Y4I5 508 aa17.21■□□□□ 0.35
UPF1-209ENST00000600310 GPR171O14626 319 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 RAP2AP10114 183 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 CD8BP10966 210 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 LSM11P83369 360 aaKnown RBP eCLIP17.2■□□□□ 0.34
UPF1-209ENST00000600310 SPIBQ01892 262 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 C1orf146Q5VVC0 180 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 PODNL1Q6PEZ8 512 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 ZNF730Q6ZMV8 503 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 MBOAT2Q6ZWT7 520 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 SLC46A3Q7Z3Q1 461 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 SLC7A13Q8TCU3 470 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 LIPHQ8WWY8 451 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 SGTBQ96EQ0 304 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 PSMG3-AS1Q96PY0 264 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 FUZQ9BT04 418 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 NANSQ9NR45 359 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 PLSCR4Q9NRQ2 329 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 SEC14L4Q9UDX3 406 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 ZNF229Q9UJW7 825 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 AURKCQ9UQB9 309 aa17.2■□□□□ 0.34
UPF1-209ENST00000600310 KLF2Q9Y5W3 355 aaPredicted RBP17.2■□□□□ 0.34
UPF1-209ENST00000600310 MPDZO75970 2070 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 TRBV4-1A0A0J9YWV2 114 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 LOC102725191A0A1B0GVB3 256 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 NKX2-6A6NCS4 301 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 MSTNO14793 375 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 PIP5K1CO60331 668 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 CIB2O75838 187 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 OR7A10O76100 309 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 GADD45GO95257 159 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 RRM2P31350 389 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 PRKCDQ05655 676 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 POU4F3Q15319 338 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 FBXL19-AS1Q494R0 122 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 FGD3Q5JSP0 725 aa17.19■□□□□ 0.34
UPF1-209ENST00000600310 NUFIP2Q7Z417 695 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms