RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NPIPB7O75200 414 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 GASTP01350 101 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 CBLP22681 906 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 IFNGR2P38484 337 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 EIF1AXP47813 144 aaKnown RBP13.42□□□□□ -0.26
TRIM28-207ENST00000597136 OMPP47874 163 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 PRKCDQ05655 676 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 SELENBP1Q13228 472 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 ANKRD34AQ69YU3 496 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 TMEM211Q6ICI0 200 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 C3orf33Q6P1S2 294 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 PGBD2Q6P3X8 592 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 FAHD1Q6P587 224 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 ZER1Q7Z7L7 766 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 MRGPRGQ86SM5 289 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 AQP11Q8NBQ7 271 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 OR10D3Q8NH80 312 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 PIGXQ8TBF5 258 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 STK35Q8TDR2 534 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 OSTF1Q92882 214 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 OSBPL10Q9BXB5 764 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 OR11A1Q9GZK7 315 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 CALHM2Q9HA72 323 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 SMURF2Q9HAU4 748 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 C20orf141Q9NUB4 165 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 CLCF1Q9UBD9 225 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 RNF6Q9Y252 685 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 CELSR2Q9HCU4 2923 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 CD8B2A6NJW9 211 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 EI24O14681 340 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 IGF2P01344 180 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ANXA8P13928 327 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ZNF26P17031 533 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 FKBP2P26885 142 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 PTGER4P35408 488 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 DAPP51397 102 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 AGFG1P52594 562 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 CTBP2P56545 445 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 PPP2R2BQ00005 443 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 HBMQ6B0K9 141 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 PPP4R4Q6NUP7 873 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 C1orf94Q6P1W5 598 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 MEX3DQ86XN8 651 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 LIX1LQ8IVB5 337 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ATG16L2Q8NAA4 619 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 OR2V1Q8NHB1 315 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 FNDC9Q8TBE3 224 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 SLC25A43Q8WUT9 341 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 RND1Q92730 232 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 DDIT4LQ96D03 193 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 BPIFA2Q96DR5 249 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 KTI12Q96EK9 354 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ARL5BQ96KC2 179 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 KLHL15Q96M94 604 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 RBM4BQ9BQ04 359 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 RBM4Q9BWF3 364 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 SRXN1Q9BYN0 137 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 KLHL4Q9C0H6 718 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 MGAT4BQ9UQ53 548 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 SPIN1Q9Y657 262 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 DCHS2Q6V1P9 2916 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 SETXQ7Z333 2677 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 TRAV36DV7A0A075B6V5 113 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 AQP8O94778 261 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ALPLP05186 524 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 IFI30P13284 250 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 KLK2P20151 261 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 CEACAM8P31997 349 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ALDH3A2P51648 485 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 PER3P56645 1201 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 CARD18P57730 90 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 FOXF2Q12947 444 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 DAG1Q14118 895 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 PON3Q15166 354 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 SGCBQ16585 318 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 SYT14P1Q58G82 188 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 C1orf140Q5VVS0 124 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 KDM4DQ6B0I6 523 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 C5orf46Q6UWT4 87 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 ESPNLQ6ZVH7 1005 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 CHMP1BQ7LBR1 199 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 CDK20Q8IZL9 346 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 TAAR8Q969N4 342 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 FAM46AQ96IP4 442 aaKnown RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 OR5B2Q96R09 309 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 UCN2Q96RP3 112 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 GPA33Q99795 319 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 DGCR6LQ9BY27 220 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 POTEKPQ9BYX7 375 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 KRCC1Q9NPI7 259 aaPredicted RBP13.41□□□□□ -0.26
TRIM28-207ENST00000597136 USE1Q9NZ43 259 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 TMEM5Q9Y2B1 443 aa13.41□□□□□ -0.26
TRIM28-207ENST00000597136 HTR3EA5X5Y0 456 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 MBD3L4A6NDZ8 208 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 MBD3L3A6NE82 208 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 MBD3L5A6NJ08 208 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 ENO4A6NNW6 628 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 KLF4O43474 513 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 ADAP00813 363 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 TFPIP10646 304 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms