RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TMEM45BQ96B21 275 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 SLC41A3Q96GZ6 507 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZNF587Q96SQ5 575 aaPredicted RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZNF426Q9BUY5 554 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 POLR2J2Q9GZM3 115 aaKnown RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 ACTR6Q9GZN1 396 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 POLR2J3Q9H1A7 115 aaKnown RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 OR10A4Q9H209 315 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 RASSF1Q9NS23 344 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 EGFL7Q9UHF1 273 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 GPR52Q9Y2T5 361 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 CASKO14936 926 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 OR5F1O95221 314 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZNF682O95780 498 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 SERPINA1P01009 418 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 IGHV3-9P01782 118 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 PPP3CBP16298 524 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 CBLP22681 906 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 MXRA7P84157 204 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 LTBQ06643 244 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ITGADQ13349 1161 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 MFSD13AQ14CX5 517 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 P2RY6Q15077 328 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 TSC22D1Q15714 1073 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 SFRP5Q5T4F7 317 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 FBXW9Q5XUX1 488 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 TTC33Q6PID6 262 aaPredicted RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 C16orf89Q6UX73 402 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 C22orf34Q6ZV56 151 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZIC4Q8N9L1 334 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 FAM156AQ8NDB6 213 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 GEMIN6Q8WXD5 167 aaKnown RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 KISS1RQ969F8 398 aaPredicted RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 FAM162AQ96A26 154 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZC3HAV1LQ96H79 300 aaKnown RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 MPP4Q96JB8 637 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 MOGAT1Q96PD6 335 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZNF385AQ96PM9 386 aaKnown RBP12.88□□□□□ -0.35
VRK3-206ENST00000594090 PRSS27Q9BQR3 290 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 HDHD5Q9BXW7 423 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 PARPBPQ9NWS1 579 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 NDE1Q9NXR1 346 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 ZNF226Q9NYT6 803 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 B3GALT5Q9Y2C3 310 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 CORINQ9Y5Q5 1042 aa12.88□□□□□ -0.35
VRK3-206ENST00000594090 CSMD2Q7Z408 3487 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 FREM1Q5H8C1 2179 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 MT-ATP6P00846 226 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 THBDP07204 575 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 HSD17B1P14061 328 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 COX5AP20674 150 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 CRYGSP22914 178 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 IGHV1-2P23083 117 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 IL32P24001 234 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 MNAT1P51948 309 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 PIN1Q13526 163 aaPredicted RBP12.87□□□□□ -0.35
VRK3-206ENST00000594090 IFI44LQ53G44 452 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 SAMD4BQ5PRF9 694 aaKnown RBP12.87□□□□□ -0.35
VRK3-206ENST00000594090 GLYATQ6IB77 296 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 CREB3L2Q70SY1 520 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 DEFB107AQ8IZN7 70 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 UBE2J2Q8N2K1 259 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 KDM8Q8N371 416 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 SCAIQ8N9R8 606 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 ADPRHL1Q8NDY3 354 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 STEAP2Q8NFT2 490 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 BCAS4Q8TDM0 211 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 HSH2DQ96JZ2 352 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 PRRC1Q96M27 445 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 POLDIP3Q9BY77 421 aaKnown RBP12.87□□□□□ -0.35
VRK3-206ENST00000594090 CLEC4MQ9H2X3 399 aaPredicted RBP12.87□□□□□ -0.35
VRK3-206ENST00000594090 B3GAT1Q9P2W7 334 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 MALT1Q9UDY8 824 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 RIMS3Q9UJD0 308 aa12.87□□□□□ -0.35
VRK3-206ENST00000594090 ANKHD1Q8IWZ3 2542 aaKnown RBP12.86□□□□□ -0.35
VRK3-206ENST00000594090 LRRN3E7EW58 273 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 SIAH2O43255 324 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 LYZL6O75951 148 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 HRGP04196 525 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 IFNW1P05000 195 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 THRBP10828 461 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 NQO1P15559 274 aaKnown RBP12.86□□□□□ -0.35
VRK3-206ENST00000594090 TCN1P20061 433 aaPredicted RBP12.86□□□□□ -0.35
VRK3-206ENST00000594090 FXNQ16595 210 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 FBXW10Q5XX13 1052 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 H1FNTQ75WM6 255 aaPredicted RBP12.86□□□□□ -0.35
VRK3-206ENST00000594090 BHLHA15Q7RTS1 189 aaPredicted RBP12.86□□□□□ -0.35
VRK3-206ENST00000594090 AAED1Q7RTV5 226 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 EPHX4Q8IUS5 362 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 NKAIN4Q8IVV8 208 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 C10orf53Q8N6V4 93 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 S100PBPQ96BU1 408 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 NSL1Q96IY1 281 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 OXGR1Q96P68 337 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 CDRT15Q96T59 188 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 ASPNQ9BXN1 380 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 SLC19A3Q9BZV2 496 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 AMBRA1Q9C0C7 1298 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 SLCO5A1Q9H2Y9 848 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 ASB6Q9NWX5 421 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms