RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	RAD51B	O15315	384 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	GATC	O43716	136 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SRPX2	O60687	465 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	WBP4	O75554	376 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CDK14	O94921	469 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	PPP1R3D	O95685	299 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	TTC4	O95801	387 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	MCF2	P10911	925 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	HOXB6	P17509	224 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CYP2B6	P20813	491 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CCNE1	P24864	410 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SAA4	P35542	130 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	BDKRB1	P46663	353 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	LEPR	P48357	1165 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	KLK7	P49862	253 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	TMBIM6	P55061	237 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	AP1S2	P56377	157 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	DSCR9	P59020	149 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	RPS27A	P62979	156 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	LTB	Q06643	244 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	NAB1	Q13506	487 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	KRR1	Q13601	381 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	HAGH	Q16775	308 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	EXOC3L4	Q17RC7	722 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	ALKBH6	Q3KRA9	238 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	UBE2U	Q5VVX9	321 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	RSBN1	Q5VWQ0	802 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF790	Q6PG37	636 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CCDC137	Q6PK04	289 aa	Known RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	USP50	Q70EL3	339 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SERINC5	Q86VE9	423 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	HORMAD1	Q86X24	394 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	TBC1D10C	Q8IV04	446 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	IQCF1	Q8N6M8	205 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SNX31	Q8N9S9	440 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	STXBP6	Q8NFX7	210 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	OR51G2	Q8NGK0	314 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	OR5H6	Q8NGV6	325 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	OR1F12	Q8NHA8	337 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	TEX47	Q8TBZ9	253 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	M1AP	Q8TC57	530 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	GATAD1	Q8WUU5	269 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SECTM1	Q8WVN6	248 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	PYDC1	Q8WXC3	89 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	LHX4	Q969G2	390 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	C11orf24	Q96F05	449 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	GAL3ST1	Q99999	423 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	C11orf70	Q9BRQ4	267 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	DCUN1D5	Q9BTE7	237 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	OSBPL11	Q9BXB4	747 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	BOLA2	Q9H3K6	86 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	NARFL	Q9H6Q4	476 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SMYD3	Q9H7B4	428 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	ANKRA2	Q9H9E1	313 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	UCK1	Q9HA47	277 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	CXorf21	Q9HAI6	301 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	NTN4	Q9HB63	628 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SLCO1B3	Q9NPD5	702 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SDHAF3	Q9NRP4	125 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	PAQR5	Q9NXK6	330 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	IL37	Q9NZH6	218 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	TAAR2	Q9P1P5	351 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	ENPP5	Q9UJA9	477 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	PACSIN2	Q9UNF0	486 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	SLC9A8	Q9Y2E8	581 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	MYH6	P13533	1939 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	MYH11	P35749	1972 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	MN1	Q10571	1320 aa	Predicted RBP	4.16	□□□□□ -1.74
SS18-223	ENST00000583595	TULP4	Q9NRJ4	1543 aa		4.16	□□□□□ -1.74
SS18-223	ENST00000583595	FMN2	Q9NZ56	1722 aa		4.15	□□□□□ -1.74
SS18-223	ENST00000583595	GLI3	P10071	1580 aa		4.15	□□□□□ -1.74
SS18-223	ENST00000583595	ZNF609	O15014	1411 aa		4.15	□□□□□ -1.74
SS18-223	ENST00000583595	CACNA1F	O60840	1977 aa		4.15	□□□□□ -1.74
SS18-223	ENST00000583595		A0A0A6YYD4	124 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	LRIT2	A6NDA9	550 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CENPX	A8MT69	81 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NPIPB9	F8W1W9	429 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ZNF195	O14628	629 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	TM9SF1	O15321	606 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	FAM189A1	O60320	539 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NOS1AP	O75052	506 aa	Predicted RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	DUSP11	O75319	330 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	UPK3A	O75631	287 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CCNK	O75909	580 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	SCGN	O76038	276 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NADK	O95544	446 aa	Predicted RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NDUFB10	O96000	172 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	PGK1	P00558	417 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	FGG	P02679	453 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	MMP1	P03956	469 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ERVK-10	P10266	1014 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	IL12A	P29459	219 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NDST2	P52849	883 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	NKX2-5	P52952	324 aa	Predicted RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	CDH4	P55283	916 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	ABCE1	P61221	599 aa	Known RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	HAND2	P61296	217 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	OC90	Q02509	493 aa	Predicted RBP	4.15	□□□□□ -1.75
SS18-223	ENST00000583595	IL18	Q14116	193 aa		4.15	□□□□□ -1.75
SS18-223	ENST00000583595	DOC2A	Q14183	400 aa		4.15	□□□□□ -1.75

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