RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ALG10Q5BKT4 473 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 WIPI1Q5MNZ9 446 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-209ENST00000573474 SLC25A30Q5SVS4 291 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 H1FNTQ75WM6 255 aaPredicted RBP12.32□□□□□ -0.44
CCDC40-209ENST00000573474 CCDC103Q8IW40 242 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 FAM26EQ8N5C1 309 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 TMEM251Q8N6I4 163 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 SCAIQ8N9R8 606 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 LRRC75AQ8NAA5 344 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 FAM98AQ8NCA5 519 aaKnown RBP12.32□□□□□ -0.44
CCDC40-209ENST00000573474 TMEM163Q8TC26 289 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 APH1BQ8WW43 257 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 SLC39A7Q92504 469 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF566Q969W8 418 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 DNAJA3Q96EY1 480 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 PLEKHA8Q96JA3 519 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 Q96MT0 163 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 SFXN2Q96NB2 322 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 OR5B2Q96R09 309 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 IL4I1Q96RQ9 567 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 ALKBH4Q9NXW9 302 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 AASSQ9UDR5 926 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 CSAG2Q9Y5P2 127 aa12.32□□□□□ -0.44
CCDC40-209ENST00000573474 FREM2Q5SZK8 3169 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 APC2O95996 2303 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 SH3D21A4FU49 640 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 MKRN2OSH3BPM6 223 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 M0R082 166 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ACOT7O00154 380 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 PLPP3O14495 311 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 IMPA2O14732 288 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ARPC3O15145 178 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 OR6A2O95222 327 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 CD14P08571 375 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 CCDC159P0C7I6 412 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 APEHP13798 732 aaKnown RBP12.31□□□□□ -0.44
CCDC40-209ENST00000573474 SHC1P29353 583 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 NOS3P29474 1203 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 FMO3P31513 532 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 SFTPDP35247 375 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 OR2B6P58173 313 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 SLC35A1P78382 337 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ZP4Q12836 540 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 OCLNQ16625 522 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 TBR1Q16650 682 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 GXYLT1Q4G148 440 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 TMEM201Q5SNT2 666 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 MEDAGQ5VYS4 303 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ARHGAP11AQ6P4F7 1023 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 TMPPEQ6ZT21 453 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 BPIFB6Q8NFQ5 453 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF417Q8TAU3 575 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 RELTQ969Z4 430 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 MIB2Q96AX9 1013 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ERMAPQ96PL5 475 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-209ENST00000573474 ZNF587Q96SQ5 575 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-209ENST00000573474 NRIP3Q9NQ35 241 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 CMC2Q9NRP2 79 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 SCN3BQ9NY72 215 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 TAS2R5Q9NYW4 299 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 BLOC1S6Q9UL45 172 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 IER3IP1Q9Y5U9 82 aa12.31□□□□□ -0.44
CCDC40-209ENST00000573474 CNTRLQ7Z7A1 2325 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 A0A1W2PNR3 127 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SULT2B1O00204 365 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SLC1A7O00341 560 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SMNDC1O75940 238 aaKnown RBP eCLIP12.3□□□□□ -0.44
CCDC40-209ENST00000573474 PMS2P2O95744 297 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 IFNGP01579 166 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 ADORA3P0DMS8 318 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 CRHBPP24387 322 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 MAGEA5P43359 124 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 MLLT10P55197 1068 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 GFRA1P56159 465 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 CTXN1P60606 82 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 ERVK-25P63136 954 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SLC10A1Q14973 349 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SLC35F1Q5T1Q4 408 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 IGFN1Q86VF2 1251 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 FAM109AQ8N4B1 249 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 ADPRHL1Q8NDY3 354 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SMPDL3BQ92485 455 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 KLHL15Q96M94 604 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 KATNB1Q9BVA0 655 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 FN3KQ9H479 309 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 ACKR4Q9NPB9 350 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 CHST11Q9NPF2 352 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 INIPQ9NRY2 104 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 PLCXD1Q9NUJ7 323 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 SEC14L4Q9UDX3 406 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 KLHL21Q9UJP4 597 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 B3GALT5Q9Y2C3 310 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 TPRKBQ9Y3C4 175 aa12.3□□□□□ -0.44
CCDC40-209ENST00000573474 A0A087WV48 116 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 A0A0J9YW62 118 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 TRIM64A6NGJ6 449 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 RIIAD1A6NNX1 92 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 MS4A18H0YCH9 400 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 RNF13O43567 381 aa12.29□□□□□ -0.44
CCDC40-209ENST00000573474 XPNPEP2O43895 674 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms