RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OSGIN1Q9UJX0 560 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 SLC35A3Q9Y2D2 325 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 NOSIPQ9Y314 301 aaKnown RBP5.89□□□□□ -1.47
VPS53-213ENST00000572334 HDGFL3Q9Y3E1 203 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 CHST2Q9Y4C5 530 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 FLVCR1Q9Y5Y0 555 aa5.89□□□□□ -1.47
VPS53-213ENST00000572334 TMED7-TICAM2A0A0A6YYA0 188 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 FAM234BA2RU67 622 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 WDR91A4D1P6 747 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 CCDC160A6NGH7 325 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 AGAP5A6NIR3 686 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 H7C417 338 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ZNF701M0R085 212 aaPredicted RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 FAAHO00519 579 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 DNPH1O43598 174 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 IDH3BO43837 385 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 LY6HO94772 140 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 TGDSO95455 350 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 CLPTM1O96005 669 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 SERPINE1P05121 402 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 TFPIP10646 304 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 CCNA2P20248 432 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 PTAFRP25105 342 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 IDH2P48735 452 aaKnown RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 CLK1P49759 484 aaKnown RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 CHN2P52757 468 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 MVDP53602 400 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ABCE1P61221 599 aaKnown RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 UFM1P61960 85 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 VLDLRP98155 873 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 LOXL1Q08397 574 aaPredicted RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 EPS8Q12929 822 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 MAD2L1Q13257 205 aaPredicted RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 CHI3L2Q15782 390 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 TMEM249Q2WGJ8 235 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 AGAP6Q5VW22 663 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 LINGO2Q7L985 606 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 SSX8Q7RTT4 187 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 C16orf62Q7Z3J2 963 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 RNF130Q86XS8 419 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ERI1Q8IV48 349 aaKnown RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 NUDCD3Q8IVD9 361 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 IQCF2Q8IXL9 164 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 MUC15Q8N387 334 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ZNF525Q8N782 197 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 PIGXQ8TBF5 258 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 FNDC8Q8TC99 324 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 APH1AQ96BI3 265 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 MUCL1Q96DR8 90 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 BOD1Q96IK1 185 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 RADILQ96JH8 1075 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 HS6ST2Q96MM7 605 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 CCDC115Q96NT0 180 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ZNF385AQ96PM9 386 aaKnown RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 TNFRSF13CQ96RJ3 184 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 SLC35A5Q9BS91 424 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 C1QTNF6Q9BXI9 259 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 NUF2Q9BZD4 464 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 DPY30Q9C005 99 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 C1orf21Q9H246 121 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ALG2Q9H553 416 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 MEAF6Q9HAF1 191 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 BARX1Q9HBU1 254 aaPredicted RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 SLC17A5Q9NRA2 495 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 SERINC1Q9NRX5 453 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.88□□□□□ -1.47
VPS53-213ENST00000572334 EXD2Q9NVH0 621 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 PNPOQ9NVS9 261 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 ASB6Q9NWX5 421 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 RHBDL2Q9NX52 303 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 UBAP1Q9NZ09 502 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 TMEM181Q9P2C4 612 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 BTNL2Q9UIR0 455 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 DCTN4Q9UJW0 460 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 MGAT4BQ9UQ53 548 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 TRAPPC4Q9Y296 219 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 TMED7Q9Y3B3 224 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 RAP2CQ9Y3L5 183 aa5.88□□□□□ -1.47
VPS53-213ENST00000572334 CIB4A0PJX0 185 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 SH3PXD2BA1X283 911 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 HTR3EA5X5Y0 456 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 LIPT2A6NK58 231 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 A8MV72 311 aaPredicted RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 VWC2LB2RUY7 222 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 E9PBE3 544 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 M0R1B8 84 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 SDHDO14521 159 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 GPR171O14626 319 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 TM9SF1O15321 606 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 ZNF208O43345 1280 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 NOL3O60936 208 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 MRPL33O75394 65 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 AGR2O95994 175 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 IGHV4-31P0DP07 118 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 UQCRBP14927 111 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 BGNP21810 368 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 TACR3P29371 465 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 ACAA2P42765 397 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 SLC1A6P48664 564 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 KHKP50053 298 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms