RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	PAQR6	Q6TCH4	344 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	C17orf107	Q6ZR85	190 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	SPATC1	Q76KD6	591 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	EIF3M	Q7L2H7	374 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	GRINA	Q7Z429	371 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	MDP1	Q86V88	176 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	JAZF1	Q86VZ6	243 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	WDFY1	Q8IWB7	410 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	GSPT2	Q8IYD1	628 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	RAB8B	Q92930	207 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	UBE2F	Q969M7	185 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	RAB39B	Q96DA2	213 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	ZNF764	Q96H86	408 aa	Predicted RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	OR7D2	Q96RA2	312 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	CITED1	Q99966	193 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	RBM4B	Q9BQ04	359 aa	Known RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	NMUR2	Q9GZQ4	415 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	TNFRSF12A	Q9NP84	129 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	NUP50	Q9UKX7	468 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	FAF1	Q9UNN5	650 aa	Predicted RBP	10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	TMED7	Q9Y3B3	224 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	CCL27	Q9Y4X3	112 aa		10.03	□□□□□ -0.8
CLK3-222	ENST00000568232	RAD51C	O43502	376 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	VSIG8	P0DPA2	414 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	SDC1	P18827	310 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	TAC1	P20366	129 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	GATA3	P23771	443 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	IDH2	P48735	452 aa	Known RBP	10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	RPS26	P62854	115 aa	Known RBP	10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	CCL8	P80075	99 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	ROR2	Q01974	943 aa	Known RBP	10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	CEACAM7	Q14002	265 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	REP15	Q6BDI9	236 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	ASPHD2	Q6ICH7	369 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	NIPAL3	Q6P499	406 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	EMB	Q6PCB8	327 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	ZDHHC24	Q6UX98	284 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232		Q6ZPA2	131 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	HMGN2P46	Q86SG4	172 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	ZNF837	Q96EG3	531 aa	Predicted RBP	10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	ZNF317	Q96PQ6	595 aa	Predicted RBP	10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	GPA33	Q99795	319 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	SF3B5	Q9BWJ5	86 aa	Known RBP	10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	GSTO2	Q9H4Y5	243 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	PLEK2	Q9NYT0	353 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	TMEM216	Q9P0N5	145 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	DUSP13	Q9UII6	198 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	MMP24	Q9Y5R2	645 aa		10.02	□□□□□ -0.81
CLK3-222	ENST00000568232	TRIM49D1	C9J1S8	452 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	CLDN34	H7C241	214 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	AP3D1	O14617	1153 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	SEC14L2	O76054	403 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	GPANK1	O95872	356 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	FKBP2	P26885	142 aa	Known RBP	10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	ARR3	P36575	388 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	RAD52	P43351	418 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	CAPZA2	P47755	286 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	PLAUR	Q03405	335 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	OR7A5	Q15622	319 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	SPDYE7P	Q495Y7	208 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	ARMCX4	Q5H9R4	360 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	SAXO2	Q658L1	398 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	CREB3L2	Q70SY1	520 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	FAM71C	Q8NEG0	241 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	DEFB108B	Q8NET1	73 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	OR7A2P	Q8NGA2	310 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	OR5AK3P	Q8NH89	298 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	KIF18A	Q8NI77	898 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	DDIT4L	Q96D03	193 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	MOV10	Q9HCE1	1003 aa	Known RBP	10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	MMP26	Q9NRE1	261 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	OSGIN1	Q9UJX0	560 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	PCDHGB4	Q9UN71	923 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	STK38L	Q9Y2H1	464 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	WIPI2	Q9Y4P8	454 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232	CACNG2	Q9Y698	323 aa		10.01	□□□□□ -0.81
CLK3-222	ENST00000568232		A0A1W2PPW3	197 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	AQP7P3	A6NL99	342 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	CLDN24	A6NM45	220 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	PIN1P1	O15428	100 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	TSPAN15	O95858	294 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	ZNF35	P13682	527 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	ATP5F1	P24539	256 aa	Predicted RBP	10	□□□□□ -0.81
CLK3-222	ENST00000568232	GLRX	P35754	106 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	PRKAA2	P54646	552 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	GLIPR1L2	Q4G1C9	344 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	RFTN2	Q52LD8	501 aa	Predicted RBP	10	□□□□□ -0.81
CLK3-222	ENST00000568232	TMEM225	Q6GV28	225 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	C16orf87	Q6PH81	154 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	TREML1	Q86YW5	311 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	EPHX4	Q8IUS5	362 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	CCNYL1	Q8N7R7	359 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	IL17RD	Q8NFM7	739 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	OR56A1	Q8NGH5	318 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	OR2T11	Q8NH01	316 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	ZG16B	Q96DA0	208 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	L3HYPDH	Q96EM0	354 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	CCT7	Q99832	543 aa		10	□□□□□ -0.81
CLK3-222	ENST00000568232	ZNF385D	Q9H6B1	395 aa		10	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms