RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SHMT2P34897 504 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 RFC4P35249 363 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 ARRB1P49407 418 aaPredicted RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 SMARCB1Q12824 385 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 TMEM183BQ1AE95 376 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 COX19Q49B96 90 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 PYHIN1Q6K0P9 492 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 ACOT1Q86TX2 421 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 ZNF547Q8IVP9 402 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 TMEM183AQ8IXX5 376 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 UBALD2Q8IYN6 164 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 SLC38A6Q8IZM9 456 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 OR4K14Q8NGD5 310 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 SYNPRQ8TBG9 265 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 MYLPFQ96A32 169 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 ASB9Q96DX5 294 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 CMTM7Q96FZ5 175 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 BMFQ96LC9 184 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 CCNL2Q96S94 520 aaPredicted RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 SECISBP2Q96T21 854 aaKnown RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 ECSITQ9BQ95 431 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 EDEM2Q9BV94 578 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 C20orf85Q9H1P6 137 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 C1orf21Q9H246 121 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 DPH5Q9H2P9 285 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 ZNF430Q9H8G1 570 aaPredicted RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 WDR76Q9H967 626 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 TM9SF3Q9HD45 589 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 GLRX2Q9NS18 164 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 AATFQ9NY61 560 aaKnown RBP eCLIP1.42□□□□□ -2.18
VPS35-207ENST00000568191 IL36GQ9NZH8 169 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 PCYOX1Q9UHG3 505 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 AK6Q9Y3D8 172 aaKnown RBP1.42□□□□□ -2.18
VPS35-207ENST00000568191 MFHAS1Q9Y4C4 1052 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 GPRASP1Q5JY77 1395 aa1.42□□□□□ -2.18
VPS35-207ENST00000568191 NSG1A0A0A6YYJ2 146 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 RGSL1A5PLK6 1076 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CD5LO43866 347 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 B4GALT2O60909 372 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ENTPD5O75356 428 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ADCY5O95622 1261 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 AK1P00568 194 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 PNMTP11086 282 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ABOP16442 354 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 PCMT1P22061 227 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 MAPK3P27361 379 aaPredicted RBP1.41□□□□□ -2.18
VPS35-207ENST00000568191 CA8P35219 290 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CXCL5P42830 114 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 GYG1P46976 350 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 GSSP48637 474 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ACADVLP49748 655 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 DAP3P51398 398 aaKnown RBP1.41□□□□□ -2.18
VPS35-207ENST00000568191 PDZK1IP1Q13113 114 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SNTB2Q13425 540 aaKnown RBP1.41□□□□□ -2.18
VPS35-207ENST00000568191 GNMTQ14749 295 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SLC25A52Q3SY17 297 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 KRTAP13-2Q52LG2 175 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 FBXW9Q5XUX1 488 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 TPGS2Q68CL5 300 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ZNF880Q6PDB4 577 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CNSTQ6PJW8 725 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ZNF620Q6ZNG0 422 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 Q6ZR03 302 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SHISA6Q6ZSJ9 500 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SLC26A11Q86WA9 606 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CLEC4FQ8N1N0 589 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 GPATCH11Q8N954 259 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CCDC47Q96A33 483 aaKnown RBP1.41□□□□□ -2.18
VPS35-207ENST00000568191 LRRC58Q96CX6 371 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 PELI1Q96FA3 418 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SEC22AQ96IW7 307 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 FCRL1Q96LA6 429 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 RIT2Q99578 217 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 FICDQ9BVA6 458 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ULBP2Q9BZM5 246 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 TMEM117Q9H0C3 514 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CLMPQ9H6B4 373 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SIAEQ9HAT2 523 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ELOVL3Q9HB03 270 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 FOLH1BQ9HBA9 442 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 POPDC2Q9HBU9 364 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SIRT7Q9NRC8 400 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 GGA2Q9UJY4 613 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 CHMP2BQ9UQN3 213 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 MEMO1Q9Y316 297 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 HEBP2Q9Y5Z4 205 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 SLC25A15Q9Y619 301 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 RFNGQ9Y644 331 aa1.41□□□□□ -2.18
VPS35-207ENST00000568191 ATP8B3O60423 1300 aa1.4□□□□□ -2.18
VPS35-207ENST00000568191 A0A087WZY1 265 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 LRP5LA4QPB2 252 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 TRDCB7Z8K6 153 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 CLDN5O00501 218 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 CXCL13O43927 109 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 PSMC3P17980 439 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 PGAM1P18669 254 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 CELP19835 753 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 CMA1P23946 247 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 MMP11P24347 488 aa1.4□□□□□ -2.19
VPS35-207ENST00000568191 P2RY1P47900 373 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms