RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 SMIM14Q96QK8 99 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 GAL3ST1Q99999 423 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 NICN1Q9BSH3 213 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 CHMP5Q9NZZ3 219 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 DCDC2Q9UHG0 476 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 PRPF19Q9UMS4 504 aaKnown RBP3.37□□□□□ -1.87
LINC00560-201ENST00000564593 ABCG2Q9UNQ0 655 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 POLDIP2Q9Y2S7 368 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 LRRC37A3O60309 1634 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 PXDNLA1KZ92 1463 aa3.37□□□□□ -1.87
LINC00560-201ENST00000564593 SLIT1O75093 1534 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 RTL1A6NKG5 1358 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 PLEKHG1Q9ULL1 1385 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 TRDCB7Z8K6 153 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 POLR2DO15514 142 aaKnown RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 PFKFB2O60825 505 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 IL1BP01584 269 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 IGHG4P01861 327 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 HMGB2P26583 209 aaKnown RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 RPL13AP40429 203 aaKnown RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 EFNB2P52799 333 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 BIDP55957 195 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF45Q02386 682 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 EGFEM1PQ0D2K5 195 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ARL6IP1Q15041 203 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 DPYSL2Q16555 572 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF544Q6NX49 715 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ACOT7LQ6ZUV0 252 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 CCDC65Q8IXS2 484 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 EIF1ADQ8N9N8 165 aaKnown RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 HTR3CQ8WXA8 447 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 SLC41A3Q96GZ6 507 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 PLEKHF1Q96S99 279 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 CAPS2Q9BXY5 557 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 CD274Q9NZQ7 290 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 CDH9Q9ULB4 789 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 KIF25-AS1Q9Y6Z4 181 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF646O15015 1829 aaPredicted RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF142P52746 1687 aaPredicted RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 XRN1Q8IZH2 1706 aaKnown RBP3.36□□□□□ -1.87
LINC00560-201ENST00000564593 ADAMTS9Q9P2N4 1935 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM2Q9UHN6 1383 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 LTN1O94822 1766 aa3.36□□□□□ -1.87
LINC00560-201ENST00000564593 CROCCQ5TZA2 2017 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 PHRF1Q9P1Y6 1649 aaKnown RBP3.35□□□□□ -1.87
LINC00560-201ENST00000564593 OVOS2A0A0J9YW53 1432 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 OVOS2Q6IE36 1432 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 PCP4L1A6NKN8 68 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 HDAC3O15379 428 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 RGS16O15492 202 aaPredicted RBP3.35□□□□□ -1.87
LINC00560-201ENST00000564593 AP2A1O95782 977 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 LGALS2P05162 132 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 COX5AP20674 150 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 BTDP43251 543 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 LCE3CQ5T5A8 94 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 OR4F3Q6IEY1 312 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 PRR22Q8IZ63 422 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 OR2L13Q8N349 312 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM252Q8N6L7 170 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 ALLCQ8N6M5 410 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 BBS1Q8NFJ9 593 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 OR5D13Q8NGL4 314 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF606Q8WXB4 792 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 ST8SIA1Q92185 356 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 RPRD1AQ96P16 312 aaPredicted RBP3.35□□□□□ -1.87
LINC00560-201ENST00000564593 CCNL2Q96S94 520 aaPredicted RBP3.35□□□□□ -1.87
LINC00560-201ENST00000564593 TBX15Q96SF7 602 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 SECISBP2Q96T21 854 aaKnown RBP3.35□□□□□ -1.87
LINC00560-201ENST00000564593 KLHDC3Q9BQ90 382 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 RAB34Q9BZG1 259 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 MAGT1Q9H0U3 335 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 MARCH5Q9NX47 278 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 IL17CQ9P0M4 197 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 COPS3Q9UNS2 423 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 FLT4P35916 1363 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 RPAP1Q9BWH6 1393 aaPredicted RBP3.35□□□□□ -1.87
LINC00560-201ENST00000564593 ADGRL3Q9HAR2 1447 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 KIF1AQ12756 1690 aa3.35□□□□□ -1.87
LINC00560-201ENST00000564593 SURF6O75683 361 aaKnown RBP3.34□□□□□ -1.87
LINC00560-201ENST00000564593 ATP5LO75964 103 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 DIRAS1O95057 198 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 IGHV3-48P01763 117 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 RBMY1CP0DJD4 496 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 POU2F1P14859 743 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 NCK1P16333 377 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 RDXP35241 583 aaKnown RBP3.34□□□□□ -1.87
LINC00560-201ENST00000564593 MAP3K8P41279 467 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 CCT3P49368 545 aaKnown RBP3.34□□□□□ -1.87
LINC00560-201ENST00000564593 RPS14P62263 151 aaKnown RBP3.34□□□□□ -1.87
LINC00560-201ENST00000564593 NDPQ00604 133 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 RIPK1Q13546 671 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 SFT2D3Q587I9 215 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 UNQ9370/PRO34162Q6UXP9 181 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 SCARA5Q6ZMJ2 495 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 EFL1Q7Z2Z2 1120 aaKnown RBP3.34□□□□□ -1.87
LINC00560-201ENST00000564593 FAM220AQ7Z4H9 259 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 C11orf53Q8IXP5 236 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 BHLHE23Q8NDY6 225 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 VCPKMTQ9H867 229 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 POLE4Q9NR33 117 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms