RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 HS3ST5Q8IZT8 346 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 ZNF843Q8N446 348 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 OR5M9Q8NGP3 310 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 ZNF845Q96IR2 970 aaPredicted RBP18.47■□□□□ 0.55
CLN3-212ENST00000564574 TP63Q9H3D4 680 aaPredicted RBP18.47■□□□□ 0.55
CLN3-212ENST00000564574 CALHM2Q9HA72 323 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 ZNF556Q9HAH1 456 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 CHST11Q9NPF2 352 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 KIF17Q9P2E2 1029 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 B3GALT5Q9Y2C3 310 aa18.47■□□□□ 0.55
CLN3-212ENST00000564574 UNC119BA6NIH7 251 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 AQP7P3A6NL99 342 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 M0R082 166 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 CASQ2O14958 399 aaPredicted RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 ZNHIT1O43257 154 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 C1QL1O75973 258 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 VAMP5O95183 116 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 FCGR2AP12318 317 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 COX10Q12887 443 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 TAF11Q15544 211 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 ACSF3Q4G176 576 aaPredicted RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 FAHD1Q6P587 224 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 CD300LDQ6UXZ3 194 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 NANOGNBQ7Z5D8 188 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 EPHX4Q8IUS5 362 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 ATG16L2Q8NAA4 619 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 ZNF417Q8TAU3 575 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 EME1Q96AY2 570 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 ZNF587Q96SQ5 575 aaPredicted RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 CIB1Q99828 191 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 RBM4BQ9BQ04 359 aaKnown RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 RBM4Q9BWF3 364 aaKnown RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 C8orf4Q9NR00 106 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 NKX1-2Q9UD57 310 aaPredicted RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 MAGED1Q9Y5V3 778 aaPredicted RBP18.46■□□□□ 0.55
CLN3-212ENST00000564574 BOD1L1Q8NFC6 3051 aa18.46■□□□□ 0.55
CLN3-212ENST00000564574 CD8B2A6NJW9 211 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 CDC42EP2O14613 210 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 SMAD9O15198 467 aaKnown RBP18.45■□□□□ 0.54
CLN3-212ENST00000564574 AKR7A3O95154 331 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 TSPAN19P0C672 248 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 PRKACGP22612 351 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 PMS2P3Q13401 168 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 PON3Q15166 354 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 TRIP10Q15642 601 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 ZBED5Q49AG3 693 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 OTUD3Q5T2D3 398 aaPredicted RBP18.45■□□□□ 0.54
CLN3-212ENST00000564574 C1orf185Q5T7R7 199 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 FCRLAQ7L513 359 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 OAFQ86UD1 273 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 SLC43A2Q8N370 569 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 LRRC17Q8N6Y2 441 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 TMEM99Q8N816 258 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 GALNT11Q8NCW6 608 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 TRIB1Q96RU8 372 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 GPA33Q99795 319 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 PRRG4Q9BZD6 226 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 NDEL1Q9GZM8 345 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 USE1Q9NZ43 259 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 CLCF1Q9UBD9 225 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 RASD1Q9Y272 281 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 HIF3AQ9Y2N7 669 aa18.45■□□□□ 0.54
CLN3-212ENST00000564574 SLC22A20A6NK97 555 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 OR6A2O95222 327 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 ACVR2AP27037 513 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 P2RY4P51582 365 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 CASP6P55212 293 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 PRPS1P60891 318 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 RPS4XP62701 263 aaKnown RBP18.44■□□□□ 0.54
CLN3-212ENST00000564574 TLE1Q04724 770 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 ZP4Q12836 540 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 DAG1Q14118 895 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 NSUN5P2Q63ZY6 315 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 GTF2IRD2BQ6EKJ0 949 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 ABLIM2Q6H8Q1 611 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 RPL13AP3Q6NVV1 102 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 RASSF6Q6ZTQ3 369 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 GTF2IRD2Q86UP8 949 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 MEX3DQ86XN8 651 aaKnown RBP18.44■□□□□ 0.54
CLN3-212ENST00000564574 DOLPP1Q86YN1 238 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 CLDN22Q8N7P3 220 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 OR13C2Q8NGS9 318 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 RNF128Q8TEB7 428 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 WNT2BQ93097 391 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 GTPBP3Q969Y2 492 aaKnown RBP18.44■□□□□ 0.54
CLN3-212ENST00000564574 NIPSNAP1Q9BPW8 284 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 SF3B5Q9BWJ5 86 aaKnown RBP18.44■□□□□ 0.54
CLN3-212ENST00000564574 UCK2Q9BZX2 261 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 FANCFQ9NPI8 374 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 SIGLEC7Q9Y286 467 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 POFUT2Q9Y2G5 429 aa18.44■□□□□ 0.54
CLN3-212ENST00000564574 A0A1W2PNV4 684 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PDLIM1O00151 329 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PLPP3O14495 311 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 CYTIPO60759 359 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PTP4A3O75365 173 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 HPRP00739 348 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 POU2F1P14859 743 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 DAPP51397 102 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PPP2R2BQ00005 443 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms