RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ASGR2P07307 311 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 RPA2P15927 270 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 MGMTP16455 207 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 ABCD3P28288 659 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 LAP3P28838 519 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 TNFRSF4P43489 277 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 ASMTP46597 345 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 ART1P52961 327 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 C21orf58P58505 322 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 PEA15Q15121 130 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 CLEC12AQ5QGZ9 265 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 PRAMEF14Q5SWL7 426 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 PODNL1Q6PEZ8 512 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 COMMD6Q7Z4G1 85 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 POGLUT1Q8NBL1 392 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 CA5BP1Q8WTZ4 195 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 MEGF10Q96KG7 1140 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 CDX2Q99626 313 aaPredicted RBP12.24□□□□□ -0.45
CLK3-206ENST00000562078 TMEM38AQ9H6F2 299 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 CACYBPQ9HB71 228 aaKnown RBP12.24□□□□□ -0.45
CLK3-206ENST00000562078 GPN1Q9HCN4 374 aaPredicted RBP12.24□□□□□ -0.45
CLK3-206ENST00000562078 TREM2Q9NZC2 230 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 FBXL3Q9UKT7 428 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 OR1A2Q9Y585 309 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 PCDHGA1Q9Y5H4 931 aa12.24□□□□□ -0.45
CLK3-206ENST00000562078 A0A1W2PP55 124 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 GSTZ1O43708 216 aaPredicted RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 FMO6PO60774 539 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 HEXAP06865 529 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 VSIG10L2P0DP72 767 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 FOSL2P15408 326 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ATF1P18846 271 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 GMFBP60983 142 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ACSM1Q08AH1 577 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 RBM39Q14498 530 aaKnown RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 NXPE4Q6UWF7 544 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 CEACAM19Q7Z692 300 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 LRRTM4Q86VH4 590 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 NUDT13Q86X67 352 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 OR52I2Q8NH67 350 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 KLK6Q92876 244 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 WDR34Q96EX3 536 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 RSRP1Q9BUV0 290 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 GGACTQ9BVM4 153 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 PHF7Q9BWX1 381 aaPredicted RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 PINK1Q9BXM7 581 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 MBNL1Q9NR56 388 aaKnown RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 ANGPT4Q9Y264 503 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 CARHSP1Q9Y2V2 147 aaKnown RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 MDC1Q14676 2089 aaKnown RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 A0A1W2PPK0 400 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 STX11O75558 287 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 FOLR2P14207 255 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ATP6V1E1P36543 226 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ZNF763Q0D2J5 394 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 SKP2Q13309 424 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 CSRP2Q16527 193 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ZNF630Q2M218 657 aaPredicted RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 AKIRIN2Q53H80 203 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 C10orf91Q5T1B1 145 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ANXA8L1Q5VT79 327 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 CDPF1Q6NVV7 123 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 ARL9Q6T311 187 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 IQCHQ86VS3 1027 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 LSRQ86X29 649 aaPredicted RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 BBS1Q8NFJ9 593 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 TFGQ92734 400 aaPredicted RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 HLA-CQ95604 372 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 TMEM185BQ9H7F4 350 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 METTL1Q9UBP6 276 aaKnown RBP12.23□□□□□ -0.45
CLK3-206ENST00000562078 MOKQ9UQ07 419 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 CAMK2AQ9UQM7 478 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 PLEKHA6Q9Y2H5 1048 aa12.23□□□□□ -0.45
CLK3-206ENST00000562078 SNRPGP15A8MWD9 76 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 SLC31A2O15432 143 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 OR8U8P0C7N1 319 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 NQO2P16083 231 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 AHRP35869 848 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 KIR2DL1P43626 348 aaPredicted RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 PNLIPRP2P54317 469 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 SLC3A1Q07837 685 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 SSX2Q16385 188 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 ANKRD39Q53RE8 183 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 BEX5Q5H9J7 111 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 ELFN2Q5R3F8 820 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 IER5LQ5T953 404 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 AKR7LQ8NHP1 331 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 ZC3H10Q96K80 434 aaKnown RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 TEFMQ96QE5 360 aaKnown RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 TBX5Q99593 518 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 NAA11Q9BSU3 229 aaPredicted RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 JAM3Q9BX67 310 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 RNF122Q9H9V4 155 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 FOXE1O00358 373 aaPredicted RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 HYAL3O43820 417 aaPredicted RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 PTHLHP12272 177 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 ABOP16442 354 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 GALP22466 123 aa12.22□□□□□ -0.45
CLK3-206ENST00000562078 RPS26P62854 115 aaKnown RBP12.22□□□□□ -0.45
CLK3-206ENST00000562078 CHAF1BQ13112 559 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms