RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GLO1Q04760 184 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 EGR3Q06889 387 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 PIGFQ07326 219 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 CRMP1Q14194 572 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TOMM34Q15785 309 aaPredicted RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 ZNF181Q2M3W8 571 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 RGS21Q2M5E4 152 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 COL28A1Q2UY09 1125 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 BTBD16Q32M84 506 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 KLHL12Q53G59 568 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 DDI2Q5TDH0 399 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 C1orf140Q5VVS0 124 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 RPL22L1Q6P5R6 122 aaKnown RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 METAP1DQ6UB28 335 aaPredicted RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 LANCL3Q6ZV70 420 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 RAB11FIP2Q7L804 512 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 SHFQ7M4L6 423 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 OLIG3Q7RTU3 272 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 SLC16A9Q7RTY1 509 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 HMGN2P46Q86SG4 172 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 ATCAYQ86WG3 371 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 PRSS58Q8IYP2 241 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TEX19Q8NA77 164 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 ATP6V1C2Q8NEY4 427 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 OR4K17Q8NGC6 315 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 OR52E2Q8NGJ4 325 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 GPR119Q8TDV5 335 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 SNX33Q8WV41 574 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 ASB15Q8WXK1 588 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 HGDQ93099 445 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 OTULINQ96BN8 352 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 NXPE2Q96DL1 559 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 FRMD6Q96NE9 622 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 WDFY2Q96P53 400 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TNFRSF13CQ96RJ3 184 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 CHCHD6Q9BRQ6 235 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 SLIRPQ9GZT3 109 aaKnown RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 ARRDC1-AS1Q9H2J1 176 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 EXOSC4Q9NPD3 245 aaKnown RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 ATP13A2Q9NQ11 1180 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 INIPQ9NRY2 104 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 GPR52Q9Y2T5 361 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 TMED7Q9Y3B3 224 aa6.84□□□□□ -1.31
VPS39-204ENST00000561818 PTRH2Q9Y3E5 179 aaKnown RBP6.84□□□□□ -1.31
VPS39-204ENST00000561818 SPTBN5Q9NRC6 3674 aaKnown RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 ZDBF2Q9HCK1 2354 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 IGKV1D-42A0A075B6H8 117 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 LOC102725191A0A1B0GVB3 256 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 METTL15A6NJ78 407 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 MCIDASD6RGH6 385 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 HYAL3O43820 417 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 SLC19A2O60779 497 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 DXOO77932 396 aaKnown RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 TPPPO94811 219 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SERPINA7P05543 415 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 LIMS3P0CW19 117 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 LIMS4P0CW20 117 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 PRKCAP17252 672 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SDC2P34741 201 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 MTNR1BP49286 362 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 PPP5CP53041 499 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 LIMK1P53667 647 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SCAND1P57086 179 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 CTXN1P60606 82 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 RPL27P61353 136 aaKnown RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 PPP3R1P63098 170 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 CSNK2A1P68400 391 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 PUDPQ08623 228 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 RASGEF1BQ0VAM2 473 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 FOXD4Q12950 439 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 CHAF1BQ13112 559 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SPCS2Q15005 226 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 PCOLCEQ15113 449 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 INAQ16352 499 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 CSRP2Q16527 193 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 ZNF239Q16600 458 aaKnown RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 CDONQ4KMG0 1287 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 CDCP2Q5VXM1 449 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 KCTD18Q6PI47 426 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 DEGS2Q6QHC5 323 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 RHOUQ7L0Q8 258 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 FAM122BQ7Z309 247 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 TMPRSS9Q7Z410 1059 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 PXKQ7Z7A4 578 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 NLGN4XQ8N0W4 816 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 ARIH2OSQ8N7S6 290 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OR10H4Q8NGA5 316 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OR51G2Q8NGK0 314 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OR5M3Q8NGP4 307 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 OR6Q1Q8NGQ2 317 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SETD6Q8TBK2 473 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 C15orf40Q8WUR7 153 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 THAP4Q8WY91 577 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SMPDL3BQ92485 455 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SGCDQ92629 289 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 PNPLA2Q96AD5 504 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SLC25A46Q96AG3 418 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 C1GALT1C1Q96EU7 318 aa6.83□□□□□ -1.32
VPS39-204ENST00000561818 SH3YL1Q96HL8 342 aaPredicted RBP6.83□□□□□ -1.32
VPS39-204ENST00000561818 TMEM41AQ96HV5 264 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms