RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 APOBEC3AP31941 199 aaPredicted RBP10.15□□□□□ -0.78
USP3-220ENST00000561381 MAP2K6P52564 334 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 EFNA4P52798 201 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 DSCR9P59020 149 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 DSTNP60981 165 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 TUBA1BP68363 451 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 TUBA4AP68366 448 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 VLDLRP98155 873 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 HOXC5Q00444 222 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 SLC9B1Q4ZJI4 515 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 PDCD4Q53EL6 469 aaKnown RBP10.15□□□□□ -0.78
USP3-220ENST00000561381 WBP2NLQ6ICG8 309 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 PODNL1Q6PEZ8 512 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 KLHL24Q6TFL4 600 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 TUBA1AQ71U36 451 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 MAVSQ7Z434 540 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 SERPINA11Q86U17 422 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 PHC2Q8IXK0 858 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 ZNF440Q8IYI8 595 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 POMGNT2Q8NAT1 580 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 OR9I1Q8NGQ6 314 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 FBXO17Q96EF6 278 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 TMEM19Q96HH6 336 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 ALKBH3Q96Q83 286 aaPredicted RBP10.15□□□□□ -0.78
USP3-220ENST00000561381 SF3B5Q9BWJ5 86 aaKnown RBP10.15□□□□□ -0.78
USP3-220ENST00000561381 TPT1P8Q9HAU6 139 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 THAP1Q9NVV9 213 aa10.15□□□□□ -0.78
USP3-220ENST00000561381 MALRD1Q5VYJ5 2156 aa10.15□□□□□ -0.79
USP3-220ENST00000561381 FBN3Q75N90 2809 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 TMEM120BA0PK00 339 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 TRPC5OSA6NMA1 111 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 A8MVM7 634 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 NR5A2O00482 541 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 NPIPB7O75200 414 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 UPK3AO75631 287 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 KRT33AO76009 404 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 WNT11O96014 354 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 IFNA2P01563 188 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 IL6P05231 212 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 IGHV4-31P0DP07 118 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 IDO1P14902 403 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 SLC25A16P16260 332 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 CRISP3P54108 245 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 CHRNB3Q05901 458 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 LRRC74AQ0VAA2 488 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 SWI5Q1ZZU3 235 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 TBRG1Q3YBR2 411 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 RNF220Q5VTB9 566 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 C1orf140Q5VVS0 124 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 TMEM225Q6GV28 225 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 CREB3L2Q70SY1 520 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 EPHX4Q8IUS5 362 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 KDM8Q8N371 416 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 GLB1L3Q8NCI6 653 aaPredicted RBP10.14□□□□□ -0.79
USP3-220ENST00000561381 OR1K1Q8NGR3 316 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 C3orf49Q96BT1 292 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 MAELQ96JY0 434 aaKnown RBP10.14□□□□□ -0.79
USP3-220ENST00000561381 SORCS2Q96PQ0 1159 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 OR52B2Q96RD2 323 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 TAPBPLQ9BX59 468 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 RSPO3Q9BXY4 272 aaPredicted RBP10.14□□□□□ -0.79
USP3-220ENST00000561381 SEC61A2Q9H9S3 476 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 SEC14L4Q9UDX3 406 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 RAB21Q9UL25 225 aa10.14□□□□□ -0.79
USP3-220ENST00000561381 A0A096LPE4 126 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 A0A1W2PPZ6 126 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 TMEM229AB2RXF0 380 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ZNF587BE7ETH6 402 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ANP32DO95626 131 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ZCCHC18P0CG32 403 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 FAM157CP0CG43 387 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ZNF16P17020 682 aaPredicted RBP10.13□□□□□ -0.79
USP3-220ENST00000561381 NCF2P19878 526 aaPredicted RBP10.13□□□□□ -0.79
USP3-220ENST00000561381 USF1P22415 310 aaPredicted RBP10.13□□□□□ -0.79
USP3-220ENST00000561381 COPZ1P61923 177 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 EGR4Q05215 589 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 LARS2Q15031 903 aaKnown RBP10.13□□□□□ -0.79
USP3-220ENST00000561381 PRAMEF8Q5VWM4 474 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 PRAMEF7Q5VXH5 474 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ATG16L1Q676U5 607 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 NIPAL3Q6P499 406 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ARIH2OSQ8N7S6 290 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 ANKS4BQ8N8V4 417 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 BCL2L2Q92843 193 aaPredicted RBP10.13□□□□□ -0.79
USP3-220ENST00000561381 MAL2Q969L2 176 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 SLC25A36Q96CQ1 311 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 BOD1Q96IK1 185 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 SLC38A2Q96QD8 506 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 PTDSS2Q9BVG9 487 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 SPATA9Q9BWV2 254 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 NELFAQ9H3P2 528 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 SDR39U1Q9NRG7 319 aaPredicted RBP10.13□□□□□ -0.79
USP3-220ENST00000561381 TMEM45AQ9NWC5 275 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 CALML5Q9NZT1 146 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 PMF1-BGLAPU3KQ54 211 aa10.13□□□□□ -0.79
USP3-220ENST00000561381 STAB1Q9NY15 2570 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 VWC2LB2RUY7 222 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 FTCDNL1E5RQL4 147 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 PHF1O43189 567 aaPredicted RBP10.12□□□□□ -0.79
USP3-220ENST00000561381 AHSA1O95433 338 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms