RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 NQO1P15559 274 aaKnown RBP19.39■□□□□ 0.69
SNX1-210ENST00000560260 CTSSP25774 331 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 AGTR1P30556 359 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 LIMS1P48059 325 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 SMSP52788 366 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 RASGEF1BQ0VAM2 473 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 MBOAT2Q6ZWT7 520 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 TUSC5Q8IXB3 177 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 SLC43A2Q8N370 569 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 C10orf53Q8N6V4 93 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 LRRC17Q8N6Y2 441 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 PAPD5Q8NDF8 572 aaKnown RBP19.39■□□□□ 0.69
SNX1-210ENST00000560260 PIGXQ8TBF5 258 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 SSC4DQ8WTU2 575 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 GMPPAQ96IJ6 420 aaPredicted RBP19.39■□□□□ 0.69
SNX1-210ENST00000560260 ZNF347Q96SE7 839 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 CCM2LQ9NUG4 571 aaPredicted RBP19.39■□□□□ 0.69
SNX1-210ENST00000560260 LYVE1Q9Y5Y7 322 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 DOPEY1Q5JWR5 2465 aa19.39■□□□□ 0.69
SNX1-210ENST00000560260 GADD45GO95257 159 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 IGF2P01344 180 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 FUT1P19526 365 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 CHRNB4P30926 498 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 PPP1R8Q12972 351 aaKnown RBP19.38■□□□□ 0.69
SNX1-210ENST00000560260 KPNB1Q14974 876 aaKnown RBP19.38■□□□□ 0.69
SNX1-210ENST00000560260 RNPS1Q15287 305 aaKnown RBP19.38■□□□□ 0.69
SNX1-210ENST00000560260 ZNF730Q6ZMV8 503 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 ZNF808Q8N4W9 903 aaPredicted RBP19.38■□□□□ 0.69
SNX1-210ENST00000560260 OR4C15Q8NGM1 316 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 ZNF775Q96BV0 537 aaPredicted RBP19.38■□□□□ 0.69
SNX1-210ENST00000560260 SGTBQ96EQ0 304 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 NAA11Q9BSU3 229 aaPredicted RBP19.38■□□□□ 0.69
SNX1-210ENST00000560260 SFXN3Q9BWM7 321 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 FKRPQ9H9S5 495 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 BCO1Q9HAY6 547 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 CHST11Q9NPF2 352 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 KLHL9Q9P2J3 617 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 B3GAT1Q9P2W7 334 aa19.38■□□□□ 0.69
SNX1-210ENST00000560260 IGKV3D-15A0A087WSY6 115 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 FAM90A27PA6NNH2 459 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 OR7A10O76100 309 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 HPRP00739 348 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 MT-ATP6P00846 226 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 CRHP06850 196 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 ASAH2BP0C7U1 165 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 IFI30P13284 250 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 MAKP20794 623 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 BMP5P22003 454 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 EDNRAP25101 427 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 GTF2E2P29084 291 aaKnown RBP19.37■□□□□ 0.69
SNX1-210ENST00000560260 SLC16A1P53985 500 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 CTBP2P56545 445 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 PRKCDQ05655 676 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 SLC17A1Q14916 467 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 EXOC3L2Q2M3D2 409 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 FAM214BQ7L5A3 538 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 NUFIP2Q7Z417 695 aaKnown RBP19.37■□□□□ 0.69
SNX1-210ENST00000560260 BTLAQ7Z6A9 289 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 MCEMP1Q8IX19 187 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 KDM8Q8N371 416 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 CNEP1R1Q8N9A8 125 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 ASB5Q8WWX0 329 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 STARD4Q96DR4 205 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 UCK2Q9BZX2 261 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 MRPL39Q9NYK5 338 aaKnown RBP19.37■□□□□ 0.69
SNX1-210ENST00000560260 COQ3Q9NZJ6 369 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 CORINQ9Y5Q5 1042 aa19.37■□□□□ 0.69
SNX1-210ENST00000560260 LRRK2Q5S007 2527 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 SH3PXD2BA1X283 911 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 ANKRD65E5RJM6 399 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 IL18BPO95998 194 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 PLGP00747 810 aaPredicted RBP19.36■□□□□ 0.69
SNX1-210ENST00000560260 NTF4P34130 210 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 GPR4P46093 362 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 ACTR3P61158 418 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 MFSD13AQ14CX5 517 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 PDK3Q15120 406 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 OR2T5Q6IEZ7 315 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 MAMDC2Q7Z304 686 aaPredicted RBP19.36■□□□□ 0.69
SNX1-210ENST00000560260 SCAIQ8N9R8 606 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 ADPRHL1Q8NDY3 354 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 OR4K5Q8NGD3 323 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 OR2T29Q8NH02 315 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 BPIFA2Q96DR5 249 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 DUS3LQ96G46 650 aaKnown RBP19.36■□□□□ 0.69
SNX1-210ENST00000560260 KLHL4Q9C0H6 718 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 DENND2DQ9H6A0 471 aaPredicted RBP19.36■□□□□ 0.69
SNX1-210ENST00000560260 GLRX2Q9NS18 164 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 C6orf203Q9P0P8 240 aaPredicted RBP19.36■□□□□ 0.69
SNX1-210ENST00000560260 ZNF629Q9UEG4 869 aaPredicted RBP19.36■□□□□ 0.69
SNX1-210ENST00000560260 ZNF229Q9UJW7 825 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 FLVCR1Q9Y5Y0 555 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 COL12A1Q99715 3063 aa19.36■□□□□ 0.69
SNX1-210ENST00000560260 MS4A18H0YCH9 400 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 CGAP01215 116 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 YES1P07947 543 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 AGAP20933 346 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 OPRM1P35372 400 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 MS4A18Q3C1V0 323 aa19.35■□□□□ 0.69
SNX1-210ENST00000560260 XKRXQ6PP77 449 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms