RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SPEF1Q9Y4P9 236 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 N6AMT1Q9Y5N5 214 aa6.65□□□□□ -1.34
VPS13C-206ENST00000558338 LAMA2P24043 3122 aaKnown RBP6.65□□□□□ -1.34
VPS13C-206ENST00000558338 SCN2AQ99250 2005 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 F5P12259 2224 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ARPC4-TTLL3A0A0A6YYG9 625 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 A0A0G2JK05 382 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SHISA7A6NL88 538 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 HSPB2A8KAH6 182 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 C17orf105B2RV13 164 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 E9PI62 339 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ADAM11O75078 769 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 FBXO24O75426 580 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 UBL3O95164 117 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 GYPBP06028 91 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TACSTD2P09758 323 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 UCHL1P09936 223 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SPI1P17947 270 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 MAOAP21397 527 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 EDNRAP25101 427 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CD1CP29017 333 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 HNRNPKP61978 463 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SIRPAP78324 504 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 BTG2P78543 158 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 E2F1Q01094 437 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 HSPB2Q16082 182 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TATDN3Q17R31 274 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 HSD17B12Q53GQ0 312 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 LCE2CQ5TA81 110 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 FNDC7Q5VTL7 733 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 Q6ZS52 159 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 KCTD20Q7Z5Y7 419 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ATG4DQ86TL0 474 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CDH24Q86UP0 819 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 NOXA1Q86UR1 476 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 C17orf82Q86X59 251 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 NAXEQ8NCW5 288 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 NPEPL1Q8NDH3 523 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CADM4Q8NFZ8 388 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 OR4M1Q8NGD0 313 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 THAP4Q8WY91 577 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 THRSPQ92748 146 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CLIP3Q96DZ5 547 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 PELI1Q96FA3 418 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 HSPA12BQ96MM6 686 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 WACQ9BTA9 647 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 NMNAT2Q9BZQ4 307 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SLA2Q9H6Q3 261 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ING3Q9NXR8 418 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 AKAP7Q9P0M2 348 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 COPZ2Q9P299 210 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 LRIT1Q9P2V4 623 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 DTX4Q9Y2E6 619 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CLDN16Q9Y5I7 305 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 NUP210LQ5VU65 1888 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 A0A0G2JMP0 313 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TRBV2A0A0J9YWF9 115 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 A0A0X1KG70 313 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 A0A1W2PR77 199 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 A0A1W2PRG6 482 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 RHPN2P1A8MT19 583 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 METTL12A8MUP2 240 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 LMO7DNF2Z398 122 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 HRKO00198 91 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ZNF264O43296 627 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ITGA10O75578 1167 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TXNDC12O95881 172 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TFP02787 698 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 EIF4EP06730 217 aaKnown RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CTSBP07858 339 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CD14P08571 375 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 GSTT2P0CG29 244 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 GSTT2BP0CG30 244 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 FAM157BP0CG42 384 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 MAPK3P27361 379 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ERP29P30040 261 aaKnown RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SDHAP31040 664 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ACVR1BP36896 505 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SKP2Q13309 424 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SMAD4Q13485 552 aaKnown RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 CDK10Q15131 360 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 NNATQ16517 81 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ZNF74Q16587 644 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 C14orf28Q4W4Y0 310 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TP53I3Q53FA7 332 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 YIF1BQ5BJH7 314 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 YOD1Q5VVQ6 348 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 GPR139Q6DWJ6 353 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 OGFOD3Q6PK18 319 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 LIX1LQ8IVB5 337 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 SLC35F3Q8IY50 421 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 C17orf47Q8NEP4 570 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 OR4M2Q8NGB6 313 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 PHOSPHO1Q8TCT1 267 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 RPS4Y2Q8TD47 263 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 ADAMTS14Q8WXS8 1223 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TRIM63Q969Q1 353 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 LCORQ96JN0 433 aaPredicted RBP6.64□□□□□ -1.35
VPS13C-206ENST00000558338 TGM7Q96PF1 710 aa6.64□□□□□ -1.35
VPS13C-206ENST00000558338 THAP7Q9BT49 309 aaPredicted RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms