RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OR52I1Q8NGK6 324 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 OR5H6Q8NGV6 325 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 DEDD2Q8WXF8 326 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ZPBPQ9BS86 351 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 TTYH2Q9BSA4 534 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 IFT27Q9BW83 186 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 RANBP3Q9H6Z4 567 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 INPP5EQ9NRR6 644 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 C20orf141Q9NUB4 165 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 NDUFB11Q9NX14 153 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ERVK13-1Q9NX77 482 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 EIF3KQ9UBQ5 218 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 A0A1W2PQ09 198 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SLC30A4O14863 429 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 MTRF1O75570 445 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 TIAF1O95411 115 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SDC2P34741 201 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CCR4P51679 360 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 NUBP1P53384 320 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CBFBQ13951 182 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CD226Q15762 336 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 MRPL14Q6P1L8 145 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 PAPD4Q6PIY7 484 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ATG4DQ86TL0 474 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 GHDCQ8N2G8 530 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 BMPERQ8N8U9 685 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SLC38A9Q8NBW4 561 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 NFAM1Q8NET5 270 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 OR13C2Q8NGS9 318 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 OR2I1PQ8NGU4 316 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 ZNF563Q8TA94 476 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SNAPC3Q92966 411 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SPSB2Q99619 263 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 CMKLR1Q99788 373 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 MARVELD1Q9BSK0 173 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 STRADBQ9C0K7 418 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 RANGRFQ9HD47 186 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 EXOGQ9Y2C4 368 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 LSM2Q9Y333 95 aaKnown RBP11.55□□□□□ -0.56
SHMT2-229ENST00000557348 SLC6A5Q9Y345 797 aa11.55□□□□□ -0.56
SHMT2-229ENST00000557348 UNC13CQ8NB66 2214 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 PI4KAP42356 2102 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 FABP12A6NFH5 140 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 PRR23D1E9PI22 279 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 RGS5O15539 181 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 HCRTR2O43614 444 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 ADAM11O75078 769 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 OR7A10O76100 309 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 IGHEP01854 428 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 PRR23D2P0DMB1 279 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 APEHP13798 732 aaKnown RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 NOS3P29474 1203 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 AVPR2P30518 371 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 EVI2BP34910 448 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 TGFBR1P36897 503 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 MAP2K3P46734 347 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 EFNA3P52797 238 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 WNT4P56705 351 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 CLDN20P56880 219 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 FOXK2Q01167 660 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 MRPL28Q13084 256 aaKnown RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 SF3A2Q15428 464 aaKnown RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 TSTQ16762 297 aaKnown RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 FAAH2Q6GMR7 532 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 DPY19L2P2Q6ZN68 376 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 MEX3DQ86XN8 651 aaKnown RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 ESX1Q8N693 406 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 APCDD1LQ8NCL9 501 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 C19orf18Q8NEA5 215 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 OR5W2Q8NH69 310 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 SLC22A8Q8TCC7 542 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 RHBDD1Q8TEB9 315 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 CREB3L1Q96BA8 519 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 LMF1Q96S06 567 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 ARRDC1-AS1Q9H2J1 176 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 C14orf119Q9NWQ9 140 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 OCIAD1Q9NX40 245 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 TMA7Q9Y2S6 64 aaKnown RBP11.54□□□□□ -0.56
SHMT2-229ENST00000557348 GPR52Q9Y2T5 361 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 NPFFR2Q9Y5X5 522 aa11.54□□□□□ -0.56
SHMT2-229ENST00000557348 A6NL46 340 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 TFECO14948 347 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ARPC3O15145 178 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 GPX5O75715 221 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ZFAND5O76080 213 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 HSMCR30P0CW71 290 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ATXN8OSP0DMR3 200 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 GALP22466 123 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ATP6V1E1P36543 226 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 RNF144AP50876 292 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-229ENST00000557348 P2RX1P51575 399 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 RRAS2P62070 204 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-229ENST00000557348 E2F1Q01094 437 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 LGALS3BPQ08380 585 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 COL28A1Q2UY09 1125 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 PLA2G2CQ5R387 149 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 ZBTB37Q5TC79 503 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 FAM122CQ6P4D5 195 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 FAM131AQ6UXB0 335 aa11.53□□□□□ -0.56
SHMT2-229ENST00000557348 MEPCEQ7L2J0 689 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms