RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SLC19A3Q9BZV2 496 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 AMBRA1Q9C0C7 1298 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 C1orf21Q9H246 121 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 TAS2R1Q9NYW7 299 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 RIMS3Q9UJD0 308 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 PRPF19Q9UMS4 504 aaKnown RBP12.07□□□□□ -0.48
SHMT2-228ENST00000557302 RASD1Q9Y272 281 aa12.07□□□□□ -0.48
SHMT2-228ENST00000557302 NOSIPQ9Y314 301 aaKnown RBP12.07□□□□□ -0.48
SHMT2-228ENST00000557302 HCFC1P51610 2035 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 MPDZO75970 2070 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 TUBAL3A6NHL2 446 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 M0R082 166 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 BGLAPP02818 100 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 RBM34P42696 430 aaKnown RBP12.06□□□□□ -0.48
SHMT2-228ENST00000557302 KIR2DL3P43628 341 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 OR3A2P47893 321 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 P2RY4P51582 365 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 FAM27E3Q08E93 113 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 SLC17A1Q14916 467 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 GPAT4Q86UL3 456 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 CYP4Z1Q86W10 505 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 OR9K2Q8NGE7 335 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF417Q8TAU3 575 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF587Q96SQ5 575 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-228ENST00000557302 PRSS27Q9BQR3 290 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF426Q9BUY5 554 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 ASPNQ9BXN1 380 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 KCNN3Q9UGI6 736 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 A4GNTQ9UNA3 340 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 B3GALT5Q9Y2C3 310 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 CORINQ9Y5Q5 1042 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 FLVCR1Q9Y5Y0 555 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 LRBAP50851 2863 aa12.06□□□□□ -0.48
SHMT2-228ENST00000557302 ITPR2Q14571 2701 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 KPNA4O00629 521 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-228ENST00000557302 MRPL33O75394 65 aaKnown RBP12.05□□□□□ -0.48
SHMT2-228ENST00000557302 PDE5AO76074 875 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 MT-ATP6P00846 226 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 NQO1P15559 274 aaKnown RBP12.05□□□□□ -0.48
SHMT2-228ENST00000557302 CBLP22681 906 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 YAP1P46937 504 aaKnown RBP12.05□□□□□ -0.48
SHMT2-228ENST00000557302 ST3GAL3Q11203 375 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 FOXD4Q12950 439 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-228ENST00000557302 DNAL1Q4LDG9 190 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 CASP12Q6UXS9 341 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 H1FNTQ75WM6 255 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-228ENST00000557302 NKAIN4Q8IVV8 208 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 OFCC1Q8IZS5 231 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 FAM86B1Q8N7N1 296 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 SCAIQ8N9R8 606 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 ADPRHL1Q8NDY3 354 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 TMEM255BQ8WV15 326 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 APH1AQ96BI3 265 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 PYURFQ96I23 114 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 HS6ST2Q96MM7 605 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 MOGAT1Q96PD6 335 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 FNDC11Q9BVV2 318 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 KLHL4Q9C0H6 718 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 PARPBPQ9NWS1 579 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 SEC14L4Q9UDX3 406 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 ENPP4Q9Y6X5 453 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 V9GYQ6 96 aa12.05□□□□□ -0.48
SHMT2-228ENST00000557302 LRRN3E7EW58 273 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 C16orf97H3BN30 126 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 J3KTA2 159 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 GYG2O15488 501 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 EDNRAP25101 427 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 UGT2B10P36537 528 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 IL1RL1Q01638 556 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 LTBQ06643 244 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 PMS2P3Q13401 168 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 POU4F3Q15319 338 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF74Q16587 644 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.04□□□□□ -0.48
SHMT2-228ENST00000557302 LINC01560Q8TB33 94 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 FAM222BQ8WU58 562 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 TMEM239Q8WW34 195 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 TMEM45BQ96B21 275 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 OXGR1Q96P68 337 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 THTPAQ9BU02 230 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 MUC13Q9H3R2 512 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 FKRPQ9H9S5 495 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 MRPL39Q9NYK5 338 aaKnown RBP12.04□□□□□ -0.48
SHMT2-228ENST00000557302 CRIM1Q9NZV1 1036 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 ACTR3BQ9P1U1 418 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 RHCGQ9UBD6 479 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 NDRG3Q9UGV2 375 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 MED31Q9Y3C7 131 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 FAM32AQ9Y421 112 aaKnown RBP12.04□□□□□ -0.48
SHMT2-228ENST00000557302 NOTCH2Q04721 2471 aa12.04□□□□□ -0.48
SHMT2-228ENST00000557302 SH3D21A4FU49 640 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 ENO4A6NNW6 628 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 FFAR1O14842 300 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 CNOT4O95628 575 aaKnown RBP12.03□□□□□ -0.48
SHMT2-228ENST00000557302 CH25HO95992 272 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 MT-ND1P03886 318 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 ZNF43P17038 809 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 ITGA2P17301 1181 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 ATP6V1B2P21281 511 aa12.03□□□□□ -0.48
SHMT2-228ENST00000557302 SSTR2P30874 369 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms