RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 ACOT7LQ6ZUV0 252 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 FAM228AQ86W67 206 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 NBPF5PQ86XG9 351 aaPredicted RBP2.8□□□□□ -1.96
SCFD1-221ENST00000556534 DHRSXQ8N5I4 330 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 OR52K2Q8NGK3 314 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 UCN3Q969E3 161 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 SLC35A5Q9BS91 424 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 ANP32EQ9BTT0 268 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 POLR2J2Q9GZM3 115 aaKnown RBP2.8□□□□□ -1.96
SCFD1-221ENST00000556534 POLR2J3Q9H1A7 115 aaKnown RBP2.8□□□□□ -1.96
SCFD1-221ENST00000556534 VCPKMTQ9H867 229 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 POLE4Q9NR33 117 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 AIG1Q9NVV5 245 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 MTRF1LQ9UGC7 380 aaKnown RBP2.8□□□□□ -1.96
SCFD1-221ENST00000556534 ERVW-1Q9UQF0 538 aa2.8□□□□□ -1.96
SCFD1-221ENST00000556534 AK6Q9Y3D8 172 aaKnown RBP2.8□□□□□ -1.96
SCFD1-221ENST00000556534 COL4A4P53420 1690 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 KANK1Q14678 1352 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 TRBV6-6A0A0A6YYG2 114 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 A0A1B0GVL5 298 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 PCP4L1A6NKN8 68 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 GJE1A6NN92 205 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 E9PBE3 544 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 RS1O15537 224 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 PRKAB2O43741 272 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 LRATO95237 230 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 LGI1O95970 557 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 IGHG4P01861 327 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 RBMY1CP0DJD4 496 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SLC2A3P11169 496 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 MX1P20591 662 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 COX7A1P24310 79 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 KLK7P49862 253 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 HNRNPA3P51991 378 aaKnown RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 EFNB2P52799 333 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SUCLG1P53597 346 aaKnown RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 PRMT2P55345 433 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 ATP5IP56385 69 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 RPS14P62263 151 aaKnown RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 LRRC63Q05C16 580 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 ZNF763Q0D2J5 394 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 KLRB1Q12918 225 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 MRPL28Q13084 256 aaKnown RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 HSP90AB3PQ58FF7 597 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 CTSL3PQ5NE16 218 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 PRAMEF5Q5TYX0 476 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 PRAMEF6Q5VXH4 476 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 OR2A2Q6IF42 318 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 METAP1DQ6UB28 335 aaPredicted RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 ACP7Q6ZNF0 438 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 UBE2J2Q8N2K1 259 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 MTURNQ8N3F0 131 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 BBS5Q8N3I7 341 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 OR9K2Q8NGE7 335 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 OR1L4Q8NGR5 311 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 FAM151AQ8WW52 585 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 C10orf35Q96D05 121 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 RASD2Q96D21 266 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 RBM14Q96PK6 669 aaKnown RBP2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SLC38A2Q96QD8 506 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 NIPSNAP3BQ9BS92 247 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 TUBGCP2Q9BSJ2 902 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SPATA16Q9BXB7 569 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 AZI2Q9H6S1 392 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SMYD3Q9H7B4 428 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SLC25A22Q9H936 323 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 NUDT15Q9NV35 164 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 TREM2Q9NZC2 230 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SEC14L3Q9UDX4 400 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 PISDQ9UG56 409 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 SUN2Q9UH99 717 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 KIF25Q9UIL4 384 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 TMED5Q9Y3A6 229 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 MAD1L1Q9Y6D9 718 aa2.79□□□□□ -1.96
SCFD1-221ENST00000556534 IGLV3-16A0A075B6K0 115 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 A0A1W2PPE3 182 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 BTBD17A6NE02 478 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 E7ESA3 106 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 DNALI1O14645 258 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 FAM189A1O60320 539 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 RAMP3O60896 148 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 SCGNO76038 276 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 KLF8O95600 359 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 POLR2EP19388 210 aaKnown RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 IMPDH1P20839 514 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 CCNCP24863 283 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 FGF9P31371 208 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 PTGDSP41222 190 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 DUSP3P51452 185 aaPredicted RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 ATP1B3P54709 279 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 PRPS1P60891 318 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 SRSF5Q13243 272 aaKnown RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 GPNMBQ14956 572 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 ARL6IP1Q15041 203 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 IMMTQ16891 758 aaKnown RBP2.78□□□□□ -1.96
SCFD1-221ENST00000556534 BEND3Q5T5X7 828 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 NANOGNBQ7Z5D8 188 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 TRIM69Q86WT6 500 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 TTC5Q8N0Z6 440 aa2.78□□□□□ -1.96
SCFD1-221ENST00000556534 OR4D9Q8NGE8 314 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms