RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RPLP0P6Q8NHW5 317 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 C15orf40Q8WUR7 153 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 IRF2BPLQ9H1B7 796 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 OR10A5Q9H207 317 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 ZFP64Q9NPA5 681 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 EXOSC3Q9NQT5 275 aaKnown RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 LRIT1Q9P2V4 623 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 ZNF222Q9UK12 451 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 HIF3AQ9Y2N7 669 aa12.34□□□□□ -0.43
SHMT2-222ENST00000555774 MRPS7Q9Y2R9 242 aaKnown RBP12.34□□□□□ -0.43
SHMT2-222ENST00000555774 FANCMQ8IYD8 2048 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MEIKINA0A087WXM9 373 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 A0A0B4J203 849 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 SPTY2D1-AS1A0A0U1RR47 76 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 IFITM5A6NNB3 132 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 HRKO00198 91 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MAGEB4O15481 346 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-222ENST00000555774 PRAF2O60831 178 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 IGHV4-34P06331 123 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 SULT1A3P0DMM9 295 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 SULT1A4P0DMN0 295 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CTSEP14091 401 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 GDNFP39905 211 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 HSD17B7P56937 341 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 IKZF1Q13422 519 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ELFN2Q5R3F8 820 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 LINC01590Q5TEZ4 76 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 SLC16A9Q7RTY1 509 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 JAZF1Q86VZ6 243 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CMTM4Q8IZR5 234 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 AVL9Q8NBF6 648 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 OR6K6Q8NGW6 343 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 C16orf52Q8NHV5 167 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ANGPTL6Q8NI99 470 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 PDCD1LG2Q9BQ51 273 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 NKX2-4Q9H2Z4 354 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 RXFP3Q9NSD7 469 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CLEC4AQ9UMR7 237 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CLDN16Q9Y5I7 305 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MKI67P46013 3256 aaKnown RBP12.33□□□□□ -0.44
SHMT2-222ENST00000555774 IGKV1D-42A0A075B6H8 117 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ELOA3DA6NLF2 546 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-222ENST00000555774 GABARAPH6UMI1 98 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 TNFRSF10AO00220 468 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 PIN1P1O15428 100 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CELA2BP08218 269 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CALCBP10092 127 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MAPK3P27361 379 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MNDAP41218 407 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 BLKP51451 505 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CCR9P51686 369 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ERVK-25P63136 954 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 TFF2Q03403 129 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 SERTAD2Q14140 314 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ELOA3BQ3SY89 546 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 KIAA0895LQ68EN5 471 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 LEG1Q6P5S2 330 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 FAM199XQ6PEV8 388 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-222ENST00000555774 NUP54Q7Z3B4 507 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 FAM220AQ7Z4H9 259 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 SYT9Q86SS6 491 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF615Q8N8J6 731 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ELOA3Q8NG57 546 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ZDHHC1Q8WTX9 485 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ZNRF4Q8WWF5 429 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 TCTN2Q96GX1 697 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 DERL3Q96Q80 235 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MNTQ99583 582 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ALG12Q9BV10 488 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 CLEC1BQ9P126 229 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MMP17Q9ULZ9 603 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 MGAT4AQ9UM21 535 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 ERVK-19Q9WJR5 959 aa12.33□□□□□ -0.44
SHMT2-222ENST00000555774 LAMA2P24043 3122 aaKnown RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 TXNDC12O95881 172 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 IGLV3-19P01714 112 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 CD14P08571 375 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 RAB40ALP0C0E4 278 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 DPP4P27487 766 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 PSMB10P40306 273 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 FZD2Q14332 565 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF74Q16587 644 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 NDUFAF6Q330K2 333 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 EMC4Q5J8M3 183 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 TMEM31Q5JXX7 168 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ZBTB37Q5TC79 503 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 FNDC7Q5VTL7 733 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ATG4DQ86TL0 474 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-222ENST00000555774 SFTPA2Q8IWL1 248 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 EXD3Q8N9H8 876 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 LRRC75AQ8NAA5 344 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 OR4C3Q8NH37 302 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 GIMAP1Q8WWP7 306 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 RAB40AQ8WXH6 277 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 RASD2Q96D21 266 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF285Q96NJ3 590 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 NECTIN4Q96NY8 510 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 SLITRK2Q9H156 845 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 C2orf42Q9NWW7 574 aa12.32□□□□□ -0.44
SHMT2-222ENST00000555774 KLHL9Q9P2J3 617 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms