RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ABHD12BQ7Z5M8 362 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 PATL1Q86TB9 770 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 RANBP3LQ86VV4 465 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 UBE2J2Q8N2K1 259 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ANKK1Q8NFD2 765 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 OR8J3Q8NGG0 315 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 OR52E4Q8NGH9 312 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 LILRB1Q8NHL6 650 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC47A1Q96FL8 570 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ZNF385AQ96PM9 386 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ZNF317Q96PQ6 595 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 ARHGDIGQ99819 225 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SH3GL1Q99961 368 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 GRIP2Q9C0E4 1043 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SLCO5A1Q9H2Y9 848 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SAR1AQ9NR31 198 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC7A10Q9NS82 523 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC13A4Q9UKG4 626 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 RCE1Q9Y256 329 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 B3GALT5Q9Y2C3 310 aa14.12□□□□□ -0.15
CCDC88C-209ENST00000554872 SETD2Q9BYW2 2564 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 TRAV36DV7A0A075B6V5 113 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 DPRXA6NFQ7 191 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 IGHV3-9P01782 118 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 PAX7P23759 505 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 ARFIP2P53365 341 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 BSPH1Q075Z2 132 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 FAPQ12884 760 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 CYLC2Q14093 348 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 SELPLGQ14242 412 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 STK11Q15831 433 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 NRF1Q16656 503 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 ZNF672Q499Z4 452 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 HSP90B2PQ58FF3 399 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 ZNF613Q6PF04 617 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 CALHM3Q86XJ0 350 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 WFDC11Q8NEX6 87 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 AKAP1Q92667 903 aaKnown RBP eCLIP14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 FBXW5Q969U6 566 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 KTI12Q96EK9 354 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC41A3Q96GZ6 507 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 TMEM43Q9BTV4 400 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 LINC00470Q9BZP3 86 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 PCDHAC1Q9H158 963 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 CXorf56Q9H5V9 222 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 ADPRHL2Q9NX46 363 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 NPAP1Q9NZP6 1156 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 KLHL14Q9P2G3 628 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 MGAT4BQ9UQ53 548 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 C2CD3Q4AC94 2353 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 ARID1AO14497 2285 aa14.11□□□□□ -0.15
CCDC88C-209ENST00000554872 CIB4A0PJX0 185 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 OVOL3O00110 214 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 AIM2O14862 343 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 ATP8B1O43520 1251 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 TPST2O60704 377 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 RAD51DO75771 328 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 DANCRP0C864 163 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 PTAFRP25105 342 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 AQP1P29972 269 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 KLF10Q13118 480 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 CAPRIN1Q14444 709 aaKnown RBP14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 OR1Q1Q15612 314 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 VMACQ2NL98 169 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 Q5PR19 223 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 NANOGP8Q6NSW7 305 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 AAED1Q7RTV5 226 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 EPHX4Q8IUS5 362 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 SCAIQ8N9R8 606 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 GPR32P1Q8NGA4 272 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 TMEM171Q8WVE6 324 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 RASSF5Q8WWW0 418 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 LRRC58Q96CX6 371 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 EPYCQ99645 322 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 NANOGQ9H9S0 305 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 TMEM27Q9HBJ8 222 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 OBP2BQ9NPH6 170 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 B3GAT1Q9P2W7 334 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 UPB1Q9UBR1 384 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 AMDHD2Q9Y303 409 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 CORINQ9Y5Q5 1042 aa14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 MAGED1Q9Y5V3 778 aaPredicted RBP14.1□□□□□ -0.15
CCDC88C-209ENST00000554872 CCT8L1PA6NM43 557 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 SHISA9B4DS77 424 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 M0QX08 132 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 ZNF432O94892 652 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 VIMP08670 466 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 CD247P20963 164 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 GTF2E2P29084 291 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 RPS5P46782 204 aaKnown RBP14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 PTH2RP49190 550 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 VEZF1Q14119 521 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 DUSP7Q16829 419 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 KLHL17Q6TDP4 642 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 TMEM108Q6UXF1 575 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 LINC00114Q6XXX2 140 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 GPAT4Q86UL3 456 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 DTX2Q86UW9 622 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 P3H2Q8IVL5 708 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 OR10A6Q8NH74 314 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms