RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ASB6Q9NWX5 421 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 MAGEL2Q9UJ55 1249 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 ADAM21Q9UKJ8 722 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 SAMD4AQ9UPU9 718 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 RCE1Q9Y256 329 aa12.75□□□□□ -0.37
CCDC88C-207ENST00000554051 IGKV1D-42A0A075B6H8 117 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 LOC102725191A0A1B0GVB3 256 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 FAM221AA4D161 298 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 TPST2O60704 377 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 HSD17B1P14061 328 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 GGT1P19440 569 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 TGFBR3Q03167 851 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 ST3GAL3Q11203 375 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 IFI44LQ53G44 452 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 SFRP5Q5T4F7 317 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 DEF8Q6ZN54 512 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 CBLL1Q75N03 491 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 H1FNTQ75WM6 255 aaPredicted RBP12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 CYP4Z1Q86W10 505 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 CCDC103Q8IW40 242 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 LINC01560Q8TB33 94 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 POP5Q969H6 163 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 SLC25A36Q96CQ1 311 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 SLC41A3Q96GZ6 507 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 TPD52L3Q96J77 140 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 HS6ST2Q96MM7 605 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 POLDIP3Q9BY77 421 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 FKRPQ9H9S5 495 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 MRPL39Q9NYK5 338 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 TAS2R16Q9NYV7 291 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 SLC7A7Q9UM01 511 aa12.74□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF814B7Z6K7 855 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 M0R082 166 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF682O95780 498 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 NQO1P15559 274 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF43P17038 809 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 KLK2P20151 261 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 CALB2P22676 271 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 PAX7P23759 505 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 P2RY4P51582 365 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 FXNQ16595 210 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 BEX5Q5H9J7 111 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 OR7E24Q6IFN5 339 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 LINC00114Q6XXX2 140 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 AAED1Q7RTV5 226 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 CXorf67Q86X51 503 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 UBE2J2Q8N2K1 259 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 C17orf78Q8N4C9 275 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 C10orf53Q8N6V4 93 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 C1orf162Q8NEQ5 155 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF417Q8TAU3 575 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 HSD17B8Q92506 261 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 DNAJA3Q96EY1 480 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 OXGR1Q96P68 337 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF587Q96SQ5 575 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 SLCO5A1Q9H2Y9 848 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 MUC13Q9H3R2 512 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 UPB1Q9UBR1 384 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 USP22Q9UPT9 525 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 MPDZO75970 2070 aa12.73□□□□□ -0.37
CCDC88C-207ENST00000554051 UTP20O75691 2785 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 RAMP1O60894 148 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 ADAP00813 363 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 SERPINA1P01009 418 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 BGLAPP02818 100 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 GRPRP30550 384 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 HOXC12P31275 282 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 C1DQ13901 141 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 FKBP9P1Q75LS8 142 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 BHLHA15Q7RTS1 189 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 HDDC2Q7Z4H3 204 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 UEVLDQ8IX04 471 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 OFCC1Q8IZS5 231 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 FITM2Q8N6M3 262 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 ANKK1Q8NFD2 765 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 OR4D11Q8NGI4 311 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 NINJ1Q92982 152 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 TAAR8Q969N4 342 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 HSH2DQ96JZ2 352 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 WFIKKN1Q96NZ8 548 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 ANKRD19PQ9H560 264 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 GORASP2Q9H8Y8 452 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 MOV10Q9HCE1 1003 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 ARL8BQ9NVJ2 186 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 PRSS50Q9UI38 385 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF229Q9UJW7 825 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 NOX1Q9Y5S8 564 aa12.72□□□□□ -0.37
CCDC88C-207ENST00000554051 OR6A2O95222 327 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 HRGP04196 525 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 HIST1H2ABP04908 130 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 SH3BGRP55822 239 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 IL1RL1Q01638 556 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 PUDPQ08623 228 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 PMS2P3Q13401 168 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 SNTB1Q13884 538 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 ZNF74Q16587 644 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 TIMM23BQ5SRD1 257 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 CREB3L2Q70SY1 520 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 HIST3H2AQ7L7L0 130 aa12.71□□□□□ -0.37
CCDC88C-207ENST00000554051 CDH24Q86UP0 819 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms