RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FCRLAQ7L513 359 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 C7orf61Q8IZ16 206 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SLC22A18ASQ8N1D0 253 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 LSMEM1Q8N8F7 131 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 AVL9Q8NBF6 648 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 DNAAF1Q8NEP3 725 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR11G2Q8NGC1 345 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR2T4Q8NH00 348 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR2T27Q8NH04 317 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR52I2Q8NH67 350 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SLC2A12Q8TD20 617 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SLC37A2Q8TED4 501 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ADAMTS14Q8WXS8 1223 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF524Q96C55 264 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 MAP6Q96JE9 813 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 MRGPRX1Q96LB2 322 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR2M2Q96R28 347 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 GABRG3Q99928 467 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 KLHDC3Q9BQ90 382 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 PBX4Q9BYU1 374 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 TWSG1Q9GZX9 223 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 C20orf85Q9H1P6 137 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR10A4Q9H209 315 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ZCCHC4Q9H5U6 513 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 EMC7Q9NPA0 242 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 NRIP3Q9NQ35 241 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 C14orf105Q9NVL8 296 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ABRACLQ9P1F3 81 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CAMK2AQ9UQM7 478 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 YBX2Q9Y2T7 364 aaKnown RBP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 KLHDC2Q9Y2U9 406 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 FREM3P0C091 2139 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SDK1Q7Z5N4 2213 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 C2orf74A8MZ97 194 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 H7C1C5 153 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OIP5O43482 229 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 GMFGO60234 142 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ARL6IP5O75915 188 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SLC22A5O76082 557 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 AK1P00568 194 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CFDP00746 253 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SERPINA3P01011 423 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 RAF1P04049 648 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SULT1A3P0DMM9 295 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SULT1A4P0DMN0 295 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 TMIGD3P0DMS9 266 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR8G3PP0DMU2 310 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CDKN2AP42771 156 aaKnown RBP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF81P51508 661 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 LCN6P62502 163 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ACTA2P62736 377 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ACTG2P63267 376 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 POU4F2Q12837 409 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 PLA2G7Q13093 441 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 C1orf61Q13536 156 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF267Q14586 743 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 PON3Q15166 354 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 TOR2AQ5JU69 321 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SDE2Q6IQ49 451 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 RPL22L1Q6P5R6 122 aaKnown RBP6.86□□□□□ -1.31
LIMA1-213ENST00000552720 ULK3Q6PHR2 472 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 Q6ZSR6 202 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 BTN2A1Q7KYR7 527 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 RNF44Q7L0R7 432 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 GRAMD2AQ8IUY3 354 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SYS1Q8N2H4 156 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 OR14A16Q8NHC5 309 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 RPLP0P6Q8NHW5 317 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SMIM4Q8WVI0 70 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 RIT1Q92963 219 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 RELTQ969Z4 430 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 SGTBQ96EQ0 304 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 Q96M85 177 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 DDOQ99489 341 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CCDC3Q9BQI4 270 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 CHIAQ9BZP6 476 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 TRIM2Q9C040 744 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 LIN7BQ9HAP6 207 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 DLL4Q9NR61 685 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 BAIAP2Q9UQB8 552 aa6.86□□□□□ -1.31
LIMA1-213ENST00000552720 KIF26BQ2KJY2 2108 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 MEIKINA0A087WXM9 373 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 TMEM72A0PK05 275 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 ZSCAN5BA6NJL1 495 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 IFITM5A6NNB3 132 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 BLOC1S5-TXNDC5H3BN57 136 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 DCTN6O00399 190 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 GPANK1O95872 356 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SLC35E2P0CK97 266 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CT45A8P0DMV1 189 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 CT45A9P0DMV2 189 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 MAOAP21397 527 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 HNRNPA2B1P22626 353 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 DNASE1P24855 282 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 DPP4P27487 766 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 RBM34P42696 430 aaKnown RBP6.85□□□□□ -1.31
LIMA1-213ENST00000552720 TNFRSF4P43489 277 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 SOX2P48431 317 aa6.85□□□□□ -1.31
LIMA1-213ENST00000552720 DIO1P49895 249 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms