RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 OR2B6P58173 313 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 PCLAFQ15004 111 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 C3orf36Q3SXR2 165 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 LINGO2Q7L985 606 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 SZRD1Q7Z422 152 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 CCNYL1Q8N7R7 359 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 ZIC4Q8N9L1 334 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 OR4F5Q8NH21 305 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 RAB39BQ96DA2 213 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 ZHX1-C8orf76Q96EF9 292 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 KTI12Q96EK9 354 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 TMEM237Q96Q45 408 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF382Q96SR6 550 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 GATA5Q9BWX5 397 aaPredicted RBP13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 NELFAQ9H3P2 528 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 NOX3Q9HBY0 568 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 MIEF1Q9NQG6 463 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 MMP26Q9NRE1 261 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 SERINC1Q9NRX5 453 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 TNFRSF19Q9NS68 423 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 C1RLQ9NZP8 487 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 SLC17A7Q9P2U7 560 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 FZR1Q9UM11 496 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 SLC9A8Q9Y2E8 581 aa13.12□□□□□ -0.31
CLSTN3-216ENST00000545663 ARPC4-TTLL3A0A0A6YYG9 625 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF503-AS2A6NEH8 195 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 IGKV3-15P01624 115 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ENO1P06733 434 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 MRPS11P82912 194 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 H3F3AP84243 136 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ACSM2AQ08AH3 577 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 UNC50Q53HI1 259 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 OTUD3Q5T2D3 398 aaPredicted RBP13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 SAMD5Q5TGI4 173 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ACSM2BQ68CK6 577 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 FAM71E1Q6IPT2 247 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ANKRD26P1Q6NSI1 321 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 CDC73Q6P1J9 531 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 FRMD7Q6ZUT3 714 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 C10orf107Q8IVU9 208 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF614Q8N883 585 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 CDS1Q92903 461 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 RAB8BQ92930 207 aa13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF385AQ96PM9 386 aaKnown RBP13.11□□□□□ -0.31
CLSTN3-216ENST00000545663 CLPSL1A2RUU4 121 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 TMEM114B3SHH9 223 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 H3BNH8 94 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 HOXA3O43365 443 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 PMS2P2O95744 297 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 KRT6AP02538 564 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 KRT6BP04259 564 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 SERPINE1P05121 402 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 ALOX5P09917 674 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 ALDH3A1P30838 453 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 KRT6CP48668 564 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 HTR6P50406 440 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 POU6F2P78424 691 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 NPRL3Q12980 569 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 CBFBQ13951 182 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 HLXQ14774 488 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 SLC17A1Q14916 467 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 ALKBH6Q3KRA9 238 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 TTMPQ5BVD1 217 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 ATG16L1Q676U5 607 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 GPRIN3Q6ZVF9 776 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 REC114Q7Z4M0 266 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 TREML1Q86YW5 311 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 ANKRD42Q8N9B4 389 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 BHLHE22Q8NFJ8 381 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 POP5Q969H6 163 aaKnown RBP13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 CIDECQ96AQ7 238 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 BTBD2Q9BX70 525 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 SHCBP1LQ9BZQ2 653 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 CRLF2Q9HC73 371 aa13.1□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF264O43296 627 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CRCPO75575 148 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CYP7B1O75881 506 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 SEC14L2O76054 403 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CHEK2O96017 543 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 NGFP01138 241 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CBR1P16152 277 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CCNA2P20248 432 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 NR4A1P22736 598 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 RAD52P43351 418 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 EVX1P49640 407 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 ATP4BP51164 291 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 SPIN4Q56A73 249 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 EXOSC6Q5RKV6 272 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 ZNF362Q5T0B9 420 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 AAED1Q7RTV5 226 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CCT7Q99832 543 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 PAIP2Q9BPZ3 127 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 MS4A7Q9GZW8 240 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 GSTO2Q9H4Y5 243 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CTPS2Q9NRF8 586 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 KLHL21Q9UJP4 597 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 LEF1Q9UJU2 399 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 WIPI2Q9Y4P8 454 aa13.09□□□□□ -0.31
CLSTN3-216ENST00000545663 CACNG2Q9Y698 323 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms