RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 RLFQ13129 1914 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 NSG1A0A0A6YYJ2 146 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 A0A1B0GVL5 298 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 FAM231BA6NCW3 169 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 GJE1A6NN92 205 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 H0Y8G0 127 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 DCTN6O00399 190 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 MAGEB4O15481 346 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 SOX15O60248 233 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 ZNF780AO75290 641 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 SNNO75324 88 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 STAMBPO95630 424 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 IL1BP01584 269 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 IGHV3-48P01763 117 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 PLEKP08567 350 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 HOXC4P09017 264 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 ZNF853P0CG23 659 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CALM1P0DP23 149 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CALM2P0DP24 149 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CALM3P0DP25 149 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 EIF2S2P20042 333 aaKnown RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 CCNCP24863 283 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 IFNA8P32881 189 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 GYG1P46976 350 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 KLK7P49862 253 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 SULT1E1P49888 294 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CDH4P55283 916 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 KRTAP10-8P60410 259 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 EGFEM1PQ0D2K5 195 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CHIT1Q13231 466 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 ZNF658BQ4V348 819 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 CENPPQ6IPU0 288 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 C6orf89Q6UWU4 347 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 IGFL3Q6UXB1 125 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 LRRC31Q6UY01 552 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 C17orf82Q86X59 251 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 ENTHD1Q8IYW4 607 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CEND1Q8N111 149 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 PNKDQ8N490 385 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 EIF1ADQ8N9N8 165 aaKnown RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 LINC01555Q8NAE3 123 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 MFSD9Q8NBP5 474 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 TRPV1Q8NER1 839 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 OR5D13Q8NGL4 314 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 OR1N2Q8NGR9 330 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 NEIL3Q8TAT5 605 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 PYROXD1Q8WU10 500 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 C10orf35Q96D05 121 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 HSFY1Q96LI6 401 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 SLC38A2Q96QD8 506 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 CCNL2Q96S94 520 aaPredicted RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 MRPL45Q9BRJ2 306 aaKnown RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 PELOQ9BRX2 385 aaKnown RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 PKIBQ9C010 78 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 SIGLEC8Q9NYZ4 499 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 MTRF1LQ9UGC7 380 aaKnown RBP1.88□□□□□ -2.11
CD44-238ENST00000534296 ADAM28Q9UKQ2 775 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 IKZF2Q9UKS7 526 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 KCNIP3Q9Y2W7 256 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 SLC25A15Q9Y619 301 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 PDS5BQ9NTI5 1447 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 ARHGAP23Q9P227 1491 aa1.88□□□□□ -2.11
CD44-238ENST00000534296 PNPLA6Q8IY17 1366 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 A0A1B0GUA9 196 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 A6NDX4 124 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 BTBD17A6NE02 478 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 OR5B21A6NL26 309 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 USP27XA6NNY8 438 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 C12orf71A8MTZ7 269 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 PSTPIP1O43586 416 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 TIMM8AO60220 97 aaPredicted RBP1.87□□□□□ -2.11
CD44-238ENST00000534296 MGRN1O60291 552 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 B4GALT2O60909 372 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 CA11O75493 328 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 CIB2O75838 187 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 TSPAN12O95859 305 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 INSP01308 110 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 PRB2P02812 416 aaPredicted RBP1.87□□□□□ -2.11
CD44-238ENST00000534296 CAPN1P07384 714 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 TROVE2P10155 538 aaKnown RBP eCLIP1.87□□□□□ -2.11
CD44-238ENST00000534296 MCF2P10911 925 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 ICAM2P13598 275 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 TCN1P20061 433 aaPredicted RBP1.87□□□□□ -2.11
CD44-238ENST00000534296 TBPP20226 339 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 MX1P20591 662 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 CXCR2P25025 360 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 CD1CP29017 333 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 KIR2DS4P43632 304 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 CASP4P49662 377 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 NUP107P57740 925 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 UBE2HP62256 183 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 NOTCH2Q04721 2471 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 SMARCB1Q12824 385 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 PSG7Q13046 419 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 OR5I1Q13606 314 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 GNMTQ14749 295 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 CYTH1Q15438 398 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 MPPED2Q15777 294 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 DUSP7Q16829 419 aa1.87□□□□□ -2.11
CD44-238ENST00000534296 ZBED5Q49AG3 693 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms