RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CXCR6O00574 342 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 ADAP00813 363 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 HRGP04196 525 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 PPP3CBP16298 524 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 GGT1P19440 569 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 COX5AP20674 150 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 CRYGSP22914 178 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 LOXP28300 417 aaPredicted RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 OR1E2P47887 323 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 ITGADQ13349 1161 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 LRRC23Q53EV4 343 aaPredicted RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 FBXW9Q5XUX1 488 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 ANKRD34AQ69YU3 496 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 CREB3L2Q70SY1 520 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 TSEN54Q7Z6J9 526 aaKnown RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 EPHX4Q8IUS5 362 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 ADPRHL1Q8NDY3 354 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 MPP4Q96JB8 637 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 ZNF385AQ96PM9 386 aaKnown RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 POLR2J2Q9GZM3 115 aaKnown RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 POLR2J3Q9H1A7 115 aaKnown RBP11.47□□□□□ -0.57
VPS28-216ENST00000533806 SLC7A7Q9UM01 511 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 RASD1Q9Y272 281 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 B3GALT5Q9Y2C3 310 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 MYO9AB2RTY4 2548 aa11.47□□□□□ -0.57
VPS28-216ENST00000533806 MS4A18H0YCH9 400 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 M0R082 166 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 KLF4O43474 513 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 MRPL33O75394 65 aaKnown RBP11.46□□□□□ -0.57
VPS28-216ENST00000533806 T-ENOLP0DO92 83 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 IGHV1-2P23083 117 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 GRPRP30550 384 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 MS4A18Q3C1V0 323 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 TMEM225Q6GV28 225 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 SEZ6L2Q6UXD5 910 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 CBLL1Q75N03 491 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 H1FNTQ75WM6 255 aaPredicted RBP11.46□□□□□ -0.57
VPS28-216ENST00000533806 VTCN1Q7Z7D3 282 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 ZNF100Q8IYN0 542 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 PGAM4Q8N0Y7 254 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 STEAP2Q8NFT2 490 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 ZNF417Q8TAU3 575 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 APH1AQ96BI3 265 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 SLC25A36Q96CQ1 311 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 MOGAT1Q96PD6 335 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 ZNF587Q96SQ5 575 aaPredicted RBP11.46□□□□□ -0.57
VPS28-216ENST00000533806 EPYCQ99645 322 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 KCTD14Q9BQ13 255 aaPredicted RBP11.46□□□□□ -0.57
VPS28-216ENST00000533806 MED18Q9BUE0 208 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 SLC19A3Q9BZV2 496 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 ACTR6Q9GZN1 396 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 FANCFQ9NPI8 374 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 MEPEQ9NQ76 525 aaPredicted RBP11.46□□□□□ -0.57
VPS28-216ENST00000533806 PARPBPQ9NWS1 579 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 SELENONQ9NZV5 590 aa11.46□□□□□ -0.57
VPS28-216ENST00000533806 ABCA4P78363 2273 aa11.46□□□□□ -0.58
VPS28-216ENST00000533806 FREM1Q5H8C1 2179 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 MPDZO75970 2070 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 CCDC168Q8NDH2 2452 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 LRRN3E7EW58 273 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 OR5F1O95221 314 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 THRBP10828 461 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 HSD17B1P14061 328 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 FUT4P22083 530 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 FOXG1P55316 489 aaPredicted RBP11.45□□□□□ -0.58
VPS28-216ENST00000533806 SLC25A3Q00325 362 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 PIN1Q13526 163 aaPredicted RBP11.45□□□□□ -0.58
VPS28-216ENST00000533806 MFSD13AQ14CX5 517 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 TSC22D1Q15714 1073 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 CDC20BQ86Y33 519 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 NKAIN4Q8IVV8 208 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 KDM8Q8N371 416 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 ZNF433Q8N7K0 673 aaPredicted RBP11.45□□□□□ -0.58
VPS28-216ENST00000533806 SCAIQ8N9R8 606 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 CCDC197Q8NCU1 140 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 S100PBPQ96BU1 408 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 BOD1Q96IK1 185 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 OXGR1Q96P68 337 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 USB1Q9BQ65 265 aaKnown RBP11.45□□□□□ -0.58
VPS28-216ENST00000533806 POLDIP3Q9BY77 421 aaKnown RBP11.45□□□□□ -0.58
VPS28-216ENST00000533806 AMBRA1Q9C0C7 1298 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 CLEC4MQ9H2X3 399 aaPredicted RBP11.45□□□□□ -0.58
VPS28-216ENST00000533806 PLEKHF2Q9H8W4 249 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 GORASP2Q9H8Y8 452 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 SLC7A10Q9NS82 523 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 ZNF226Q9NYT6 803 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 RIMS3Q9UJD0 308 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 A4GNTQ9UNA3 340 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 CORINQ9Y5Q5 1042 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 SNX13Q9Y5W8 968 aa11.45□□□□□ -0.58
VPS28-216ENST00000533806 FFAR1O14842 300 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 CASKO14936 926 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 ZNF432O94892 652 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 PRSS23O95084 383 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 HPRP00739 348 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 MT-ATP6P00846 226 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 SERPINA1P01009 418 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 IGF2P01344 180 aa11.44□□□□□ -0.58
VPS28-216ENST00000533806 IGHV3-9P01782 118 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms