RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NOSIPQ9Y314 301 aaKnown RBP13.34□□□□□ -0.27
CPSF1-208ENST00000532560 NOTCH2Q04721 2471 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 TRAV36DV7A0A075B6V5 113 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 FAM221AA4D161 298 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 TRAPPC13A5PLN9 417 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 CPSF4LA6NMK7 179 aaKnown RBP13.33□□□□□ -0.28
CPSF1-208ENST00000532560 A6NNC1 897 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 OR2T1O43869 369 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 FKBP6O75344 327 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 VAMP5O95183 116 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 LYPD3O95274 346 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 CNOT4O95628 575 aaKnown RBP13.33□□□□□ -0.28
CPSF1-208ENST00000532560 ACADSP16219 412 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 PSMB1P20618 241 aaKnown RBP13.33□□□□□ -0.28
CPSF1-208ENST00000532560 RPS5P46782 204 aaKnown RBP13.33□□□□□ -0.28
CPSF1-208ENST00000532560 SLC34A1Q06495 639 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 LINC00114Q6XXX2 140 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 Q6ZT83 130 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 TSPYL5Q86VY4 417 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-208ENST00000532560 PGAM4Q8N0Y7 254 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 TMEM99Q8N816 258 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 LZICQ8WZA0 190 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 TMEM45BQ96B21 275 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF775Q96BV0 537 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-208ENST00000532560 KLHL4Q9C0H6 718 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 SH3GLB1Q9Y371 365 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 FLVCR1Q9Y5Y0 555 aa13.33□□□□□ -0.28
CPSF1-208ENST00000532560 ABCA12Q86UK0 2595 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 APCP25054 2843 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 GSTA4O15217 222 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 CTAG2O75638 210 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 THY1P04216 161 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 PPP3CBP16298 524 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 GGT1P19440 569 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 EDNRAP25101 427 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 GTF2E2P29084 291 aaKnown RBP13.32□□□□□ -0.28
CPSF1-208ENST00000532560 SELENOWP63302 87 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 MFSD13AQ14CX5 517 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 P2RY6Q15077 328 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 POU4F3Q15319 338 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 TAF11Q15544 211 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 TMEM200AQ86VY9 491 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF100Q8IYN0 542 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 OR9K2Q8NGE7 335 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 RNF217Q8TC41 542 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 TAAR8Q969N4 342 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 APH1AQ96BI3 265 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 MPP4Q96JB8 637 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 LURAP1Q96LR2 239 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 WFIKKN1Q96NZ8 548 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 MED18Q9BUE0 208 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF426Q9BUY5 554 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 NDE1Q9NXR1 346 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 RASD1Q9Y272 281 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 GPR52Q9Y2T5 361 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 FREM1Q5H8C1 2179 aa13.32□□□□□ -0.28
CPSF1-208ENST00000532560 VGLL3A8MV65 326 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 MRPL33O75394 65 aaKnown RBP13.31□□□□□ -0.28
CPSF1-208ENST00000532560 OR5F1O95221 314 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 TNFRSF1BP20333 461 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 COX5AP20674 150 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 PTDSS1P48651 473 aaKnown RBP13.31□□□□□ -0.28
CPSF1-208ENST00000532560 CASP12Q6UXS9 341 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 WDR88Q6ZMY6 472 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 DEF8Q6ZN54 512 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 CBLL1Q75N03 491 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 GPAT4Q86UL3 456 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 CXorf67Q86X51 503 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-208ENST00000532560 P3H2Q8IVL5 708 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 RBM15BQ8NDT2 890 aaKnown RBP13.31□□□□□ -0.28
CPSF1-208ENST00000532560 ADPRHL1Q8NDY3 354 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 STEAP2Q8NFT2 490 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 SLC25A36Q96CQ1 311 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 SLC41A3Q96GZ6 507 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 TPD52L3Q96J77 140 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 HDHD5Q9BXW7 423 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 SLC19A3Q9BZV2 496 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 RASSF1Q9NS23 344 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 PARPBPQ9NWS1 579 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 ZNF226Q9NYT6 803 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 ADA2Q9NZK5 511 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 NKX1-2Q9UD57 310 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-208ENST00000532560 MALT1Q9UDY8 824 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 PRSS50Q9UI38 385 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 SLC7A7Q9UM01 511 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 B3GALT5Q9Y2C3 310 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 CORINQ9Y5Q5 1042 aa13.31□□□□□ -0.28
CPSF1-208ENST00000532560 M0R082 166 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ENTPD5O75356 428 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ADAP00813 363 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 MT-ATP6P00846 226 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 BGLAPP02818 100 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 HSD17B1P14061 328 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 CRYGSP22914 178 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 GRPRP30550 384 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 NTF4P34130 210 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 OR1E2P47887 323 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 TAS2R41P59536 307 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 KRTAP10-9P60411 292 aa13.3□□□□□ -0.28
CPSF1-208ENST00000532560 ACTR3P61158 418 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms